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8 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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PDZD4
PDZ domain containing 4
Chromosome X · Xq28
NCBI Gene: 57595Ensembl: ENSG00000067840.13HGNC: HGNC:21167UniProt: B3KW03
18PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Swiss-Prot Reviewed
cell cortexneurodegenerative diseaseautismmovement disorderHand tremor
✦AI Summary

PDZD4 (PDZ domain containing 4) is an X-linked gene encoding a PDZ domain-containing protein with emerging roles in neurodevelopmental and metabolic diseases. Primary function: PDZD4 encodes a protein that localizes to the plasma membrane 1 and is normally expressed in fetal brain tissue 1. The protein contains PDZ domains, which typically mediate protein-protein interactions at cellular membranes. Mechanism and disease relevance: PDZD4 variants have been identified in neurodevelopmental disorders (NDDs) and autism spectrum disorder (ASD). Pathogenic PDZD4 variants were discovered through re-evaluation of exome sequencing data in NDD patients with skewed X-chromosome X patterns, suggesting X-linked inheritance 2. Biallelic PDZD4 variants were identified in Pakistani families with ASD, including homozygous missense mutations 3. Clinical significance: While PDZD4 deletions spanning exon 1 occur in contiguous deletion syndromes affecting X-chromosome X, evidence indicates that isolated PDZD4 deletions do not cause additional clinical manifestations beyond those from adjacent gene losses 4. However, PDZD4 appears relevant to prognosis in hepatocellular carcinoma, where it was identified as part of prognostic gene signatures associated with stromal/immune microenvironment features 56. In synovial sarcomas, PDZD4 overexpression promoted cell growth, suggesting oncogenic potential 1.

Sources cited
1
PDZD4 variants identified in NDD patients through re-evaluation of X-linked genes in cases with skewed X-chromosome inactivation
PMID: 36879111
2
Biallelic PDZD4 variants including homozygous missense mutations identified in Pakistani families with autism spectrum disorder
PMID: 38649688
3
PDZD4 protein localizes to plasma membrane, normally expressed in fetal brain, and overexpression promotes cell growth in synovial sarcomas
PMID: 15077175
4
PDZD4 deletions do not cause additional clinical manifestations beyond those from adjacent gene losses in contiguous deletion syndromes
PMID: 24668863
5
PDZD4 identified as one of seven OS-related genes in hepatocellular carcinoma radiomics signature associated with TACE treatment response
PMID: 37708675
6
PDZD4 included in five-gene prognostic signature based on stromal/immune scores in liver cancer microenvironment
PMID: 32758021
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.42Moderate
autismOpen Targets
0.14Weak
Abnormal facial shapeOpen Targets
0.11Weak
Coarse facial featuresOpen Targets
0.11Weak
Hand tremorOpen Targets
0.11Weak
HyperactivityOpen Targets
0.11Weak
HypotoniaOpen Targets
0.11Weak
Intellectual disabilityOpen Targets
0.11Weak
KyphoscoliosisOpen Targets
0.11Weak
microcephalyOpen Targets
0.11Weak
movement disorderOpen Targets
0.11Weak
colorectal carcinomaOpen Targets
0.04Suggestive
Sleep DisorderOpen Targets
0.03Suggestive
colorectal cancerOpen Targets
0.02Suggestive
synovial sarcomaOpen Targets
0.02Suggestive
sleep apneaOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.02Suggestive
ataxia telangiectasiaOpen Targets
0.02Suggestive
diabetes mellitusOpen Targets
0.02Suggestive
hepatocellular carcinomaOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
BCAMProtein interaction75%IDH3GCo-mentioned in literature25%
Tissue Expression6 tissues
Brain
100%
Heart
9%
Bone Marrow
7%
Liver
6%
Lung
5%
Ovary
4%
Gene Interaction Network
Click a node to explore
PDZD4BCAMIDH3G
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q17RL8
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.41Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.23 [0.14–0.41]
RankingsWhere PDZD4 stands among ~20K protein-coding genes
  • #14,772of 20,598
    Most Researched18
  • #2,085of 17,882
    Most Constrained (LOEUF)0.41 · top quartile
Genes detectedPDZD4
Sources retrieved8 papers
Response time—
📄 Sources
8▼
1
Skewed X-chromosome inactivation in unsolved neurodevelopmental disease cases can guide re-evaluation For X-linked genes.
PMID: 36879111
Eur J Hum Genet · 2023
1.00
2
Biallelic variants identified in 36 Pakistani families and trios with autism spectrum disorder.
PMID: 38649688
Sci Rep · 2024
0.88
3
L1CAM whole gene deletion in a child with L1 syndrome.
PMID: 24668863
Am J Med Genet A · 2014
0.75
4
Contiguous ABCD1 DXS1357E deletion syndrome: report of an autopsy case.
PMID: 22994209
Neuropathology · 2013
0.63
5
A radiomics signature associated with underlying gene expression pattern for the prediction of prognosis and treatment response in hepatocellular carcinoma.
PMID: 37708675
Eur J Radiol · 2023
0.50