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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PEX12
peroxisomal biogenesis factor 12
Chromosome 17 Β· 17q12
NCBI Gene: 5193Ensembl: ENSG00000108733.11HGNC: HGNC:8854UniProt: O00623
41PubMed Papers
23Diseases
0Drugs
118Pathogenic Variants
FUNCTIONAL ROLE
Transporter
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
ubiquitin protein ligase activityprotein bindingzinc ion bindingubiquitin ligase activator activityPeroxisome biogenesis disorder-Zellweger syndrome spectrumperoxisome biogenesis disorder 3A (Zellweger)peroxisome biogenesis disorder type 3BZellweger syndrome
✦AI Summary

PEX12 is a peroxisomal membrane protein essential for peroxisome biogenesis and organization. It functions as a component of a retrotranslocation channel composed of PEX2, PEX10, and PEX12, where each subunit contributes five transmembrane segments that coassemble into an open channel 1. PEX12 contains a zinc-binding RING finger domain at its C-terminus 2 and mediates recycling of the PEX5 import receptor from peroxisomes to the cytosol 3. The protein interacts directly with both PEX5 and PEX10 through its zinc-binding domain 2, and regulates PEX5 recycling by activating the E3 ubiquitin ligase activity of PEX10. When recycling is compromised, PEX12 stimulates polyubiquitination of PEX5, leading to its degradation 1. PEX12 is essential for peroxisomal matrix protein import 4 and plays a critical role in plant and mammalian development 5. Mutations in PEX12 cause peroxisome biogenesis disorder complementation group 3, including Zellweger syndrome, a lethal neurological disorder characterized by defective peroxisomal protein import 46. Genotype-phenotype correlation suggests that loss of PEX12 function produces more severe clinical phenotypes 7.

Sources cited
1
PEX12 is a component of a ubiquitin ligase retrotranslocation channel with PEX2 and PEX10; structure shows five transmembrane segments per subunit forming an open channel; monoubiquitylation enables receptor extraction while polyubiquitylation leads to degradation
PMID: 35768507
2
PEX12 contains a zinc-binding domain at its C-terminus; interacts with both PEX5 and PEX10; acts downstream of receptor docking in peroxisomal matrix protein import
PMID: 10562279
3
PEX12 mediates export of the PEX5 receptor from peroxisomes to the cytosol, promoting PEX5 recycling
PMID: 9354782
4
PEX12 mutations cause peroxisome biogenesis disorder complementation group 3; PEX12 is essential for peroxisomal matrix protein import
PMID: 9090384
5
PEX12 encodes a 359-amino-acid peroxisomal membrane protein with RING motif; mutations cause Zellweger syndrome group III; N- and C-terminal cytosolic regions are essential for function
PMID: 9632816
6
PEX12 is required for peroxisome biogenesis and essential for plant development; null mutants are developmentally arrested during early embryogenesis
PMID: 16113209
7
All peroxisome biogenesis disorder complementation group 3 patients carry PEX12 mutations; loss of PEX12 function correlates with more severe clinical and cellular phenotypes
PMID: 9792857
Disease Associationsβ“˜23
Peroxisome biogenesis disorder-Zellweger syndrome spectrumOpen Targets
0.83Strong
peroxisome biogenesis disorder 3A (Zellweger)Open Targets
0.82Strong
peroxisome biogenesis disorder type 3BOpen Targets
0.79Strong
Zellweger syndromeOpen Targets
0.79Strong
peroxisome biogenesis disorderOpen Targets
0.72Strong
neurodegenerative diseaseOpen Targets
0.43Moderate
genetic disorderOpen Targets
0.41Moderate
peroxisome biogenesis disorder 1A (Zellweger)Open Targets
0.41Moderate
peroxisome biogenesis disorder 1BOpen Targets
0.37Weak
Zellweger spectrum disordersOpen Targets
0.37Weak
idiopathic pulmonary fibrosisOpen Targets
0.10Weak
uveitisOpen Targets
0.02Suggestive
Pancreatic pseudocystOpen Targets
0.02Suggestive
injuryOpen Targets
0.02Suggestive
breast cancerOpen Targets
0.01Suggestive
esophageal cancerOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
colorectal carcinomaOpen Targets
0.00Suggestive
lymph node metastatic carcinomaOpen Targets
0.00Suggestive
peroxisomal diseaseOpen Targets
0.00Suggestive
Peroxisome biogenesis disorder 3AUniProt
Peroxisome biogenesis disorder 3BUniProt
Peroxisome biogenesis disorder complementation group 3UniProt
Pathogenic Variants118
NM_000286.3(PEX12):c.625C>T (p.Gln209Ter)Pathogenic
Peroxisome biogenesis disorder type 3B;Peroxisome biogenesis disorder 3A (Zellweger)|Peroxisome biogenesis disorder|Peroxisome biogenesis disorder 3A (Zellweger)
β˜…β˜…β˜†β˜†2026β†’ Residue 209
NM_000286.3(PEX12):c.223_224del (p.Leu75fs)Pathogenic
Peroxisome biogenesis disorder 3A (Zellweger);Peroxisome biogenesis disorder type 3B|Peroxisome biogenesis disorder 3A (Zellweger)
β˜…β˜…β˜†β˜†2026β†’ Residue 75
NM_000286.3(PEX12):c.538C>T (p.Arg180Ter)Pathogenic
Peroxisome biogenesis disorder 3A (Zellweger)|Peroxisomal biogenesis disorder 3b|Peroxisome biogenesis disorder type 3B;Peroxisome biogenesis disorder 3A (Zellweger)|Peroxisome biogenesis disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 180
NM_000286.3(PEX12):c.268_271del (p.Lys90fs)Pathogenic
not provided|Peroxisome biogenesis disorder type 3B;Peroxisome biogenesis disorder 3A (Zellweger)|Peroxisome biogenesis disorder 3A (Zellweger)|Peroxisome biogenesis disorder|PEX12-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 90
NM_000286.3(PEX12):c.604C>T (p.Arg202Ter)Pathogenic
Peroxisome biogenesis disorder 3A (Zellweger);Peroxisome biogenesis disorder type 3B|Peroxisome biogenesis disorder 3A (Zellweger)|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 202
NM_000286.3(PEX12):c.744dup (p.Thr249fs)Pathogenic
Peroxisome biogenesis disorder type 3B;Peroxisome biogenesis disorder 3A (Zellweger)|not provided|Peroxisome biogenesis disorder|Peroxisome biogenesis disorder 3A (Zellweger)
β˜…β˜…β˜†β˜†2026β†’ Residue 249
NM_000286.3(PEX12):c.888_889del (p.Leu297fs)Pathogenic
not provided|Peroxisome biogenesis disorder 3A (Zellweger)|Peroxisome biogenesis disorder|Peroxisome biogenesis disorder type 3B|Inborn genetic diseases|PEX12-related disorder|Peroxisome biogenesis disorder type 3B;Peroxisome biogenesis disorder 3A (Zellweger)
β˜…β˜…β˜†β˜†2026β†’ Residue 297
NM_000286.3(PEX12):c.126+1G>TPathogenic
Peroxisome biogenesis disorder 3A (Zellweger)|Peroxisome biogenesis disorder|not provided|Peroxisome biogenesis disorder 3A (Zellweger);Peroxisome biogenesis disorder type 3B|Acute myeloid leukemia
β˜…β˜…β˜†β˜†2026
NM_000286.3(PEX12):c.910_911del (p.Cys304fs)Pathogenic
Peroxisome biogenesis disorder 3A (Zellweger)|not provided|Peroxisome biogenesis disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 304
NM_000286.3(PEX12):c.511del (p.Glu171fs)Pathogenic
Peroxisome biogenesis disorder 3A (Zellweger)
β˜…β˜…β˜†β˜†2025β†’ Residue 171
NM_000286.3(PEX12):c.987_988del (p.Phe330fs)Pathogenic
Peroxisome biogenesis disorder type 3B;Peroxisome biogenesis disorder 3A (Zellweger)|Peroxisome biogenesis disorder 3A (Zellweger)|Peroxisome biogenesis disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 330
NM_000286.3(PEX12):c.334C>T (p.Gln112Ter)Pathogenic
not provided|Peroxisome biogenesis disorder type 3B;Peroxisome biogenesis disorder 3A (Zellweger)|Peroxisome biogenesis disorder 3A (Zellweger)|PEX12-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 112
NM_000286.3(PEX12):c.680+1G>APathogenic
Peroxisome biogenesis disorder type 3B;Peroxisome biogenesis disorder 3A (Zellweger)|Peroxisome biogenesis disorder 3A (Zellweger)
β˜…β˜…β˜†β˜†2025
NM_000286.3(PEX12):c.530AAC[1] (p.Gln178del)Pathogenic
Peroxisome biogenesis disorder 3A (Zellweger)|Peroxisome biogenesis disorder type 3B;Peroxisome biogenesis disorder 3A (Zellweger)|Peroxisome biogenesis disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 178
NM_000286.3(PEX12):c.894del (p.Lys299_Met300insTer)Pathogenic
not provided|Peroxisome biogenesis disorder type 3B;Peroxisome biogenesis disorder 3A (Zellweger)|Peroxisome biogenesis disorder 3A (Zellweger)|PEX12-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 299
NM_000286.3(PEX12):c.1044ACA[1] (p.Gln349del)Pathogenic
Peroxisome biogenesis disorder 3A (Zellweger);Peroxisome biogenesis disorder type 3B|Peroxisome biogenesis disorder 3A (Zellweger)|Peroxisome biogenesis disorder type 3B|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 349
NM_000286.3(PEX12):c.875_876del (p.Asn291_Ser292insTer)Pathogenic
Peroxisome biogenesis disorder 3A (Zellweger)|Peroxisome biogenesis disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 291
NM_000286.3(PEX12):c.260_261insAA (p.Tyr87Ter)Pathogenic
Peroxisome biogenesis disorder 3A (Zellweger)|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 87
NM_000286.3(PEX12):c.1009C>T (p.Gln337Ter)Pathogenic
not provided|Peroxisome biogenesis disorder 3A (Zellweger);Peroxisome biogenesis disorder type 3B|Peroxisome biogenesis disorder 3A (Zellweger)
β˜…β˜…β˜†β˜†2025β†’ Residue 337
NM_000286.3(PEX12):c.69_76dup (p.Gln26delinsArgTer)Pathogenic
Peroxisome biogenesis disorder type 3B;Peroxisome biogenesis disorder 3A (Zellweger)|Peroxisome biogenesis disorder 3A (Zellweger)
β˜…β˜…β˜†β˜†2024β†’ Residue 26
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Related Genes
HSD17B4Protein interaction100%PEX11AProtein interaction100%ABCD3Protein interaction98%PEX5LProtein interaction90%ACOX1Protein interaction84%UBE2D2Protein interaction82%
Tissue Expression6 tissues
Heart
100%
Brain
65%
Liver
53%
Ovary
44%
Lung
24%
Bone Marrow
22%
Gene Interaction Network
Click a node to explore
PEX12HSD17B4PEX11AABCD3PEX5LACOX1UBE2D2
PROTEIN STRUCTURE
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AlphaFoldAI-predicted Β· UniProt O00623
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.22LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.90 [0.68–1.22]
RankingsWhere PEX12 stands among ~20K protein-coding genes
  • #10,050of 20,598
    Most Researched41
  • #660of 5,498
    Most Pathogenic Variants118 Β· top quartile
  • #12,813of 17,882
    Most Constrained (LOEUF)1.22
Genes detectedPEX12
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
PMID: 20301621
1.00
2
The Arabidopsis PEX12 gene is required for peroxisome biogenesis and is essential for development.
PMID: 16113209
Plant Physiol Β· 2005
0.90
3
A peroxisomal ubiquitin ligase complex forms a retrotranslocation channel.
PMID: 35768507
Nature Β· 2022
0.80
4
Newly born peroxisomes are a hybrid of mitochondrial and ER-derived pre-peroxisomes.
PMID: 28146471
Nature Β· 2017
0.70
5
Isolation of the human PEX12 gene, mutated in group 3 of the peroxisome biogenesis disorders.
PMID: 9090384
Nat Genet Β· 1997
0.60