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GeneE
26 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PGK1
phosphoglycerate kinase 1
Chromosome X Β· Xq21.1
NCBI Gene: 5230Ensembl: ENSG00000102144.16HGNC: HGNC:8896UniProt: P00558
334PubMed Papers
21Diseases
0Drugs
17Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub GeneKinase
RESEARCH IMPACT
Highly StudiedTrending
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
phosphoglycerate kinase activityprotein serine/threonine kinase activityprotein bindingnegative regulation of pyruvate decarboxylation to acetyl-CoAglycogen storage disease due to phosphoglycerate kinase 1 deficiencyMenkes diseaseX-linked distal spinal muscular atrophy type 3occipital horn syndrome
✦AI Summary

PGK1 is a glycolytic enzyme that catalyzes the conversion of 1,3-diphosphoglycerate to 3-phosphoglycerate, producing ATP 1. Beyond its canonical enzymatic role, PGK1 functions as a mitochondrial protein kinase that phosphorylates pyruvate dehydrogenase kinase to suppress oxidative phosphorylation and promote glycolysis 2. PGK1 activity is dynamically regulated by multiple post-translational modifications including O-GlcNAcylation, crotonylation, succinylation, phosphorylation, and arginine methylation, which coordinate glycolytic flux and mitochondrial metabolism 23456. In cancer contexts, enhanced PGK1 modification and activation promote the Warburg effectβ€”increased glycolysis coupled with suppressed TCA cycle activityβ€”supporting tumor growth in glioblastoma, colorectal cancer, breast cancer, and esophageal cancer 24567. Macrophage-derived IL-6 enhances PGK1 phosphorylation to promote aerobic glycolysis and tumorigenesis 5. In non-malignant contexts, PGK1 interacts with androgen receptors to regulate granulosa cell metabolism and ovulation, with pathogenic implications for polycystic ovary syndrome 8. PGK1 modifications serve as prognostic biomarkers across multiple cancer types.

Sources cited
1
PGK1 catalyzes the reversible conversion of 1,3-diphosphoglycerate to 3-phosphoglycerate in glycolysis
PMID: 30323285
2
O-GlcNAcylation of PGK1 at T255 enhances glycolysis and enables PGK1 translocation to mitochondria where it inhibits pyruvate dehydrogenase complex
PMID: 31911580
3
Hypoxia-induced downregulation of PGK1 crotonylation promotes glycolysis by activating pyruvate dehydrogenase kinase 1; low PGK1 K131cr correlates with breast cancer malignancy and poor prognosis
PMID: 39134530
4
HIF1Ξ±/ATF3 regulate P4HA1-mediated succinate signaling that increases PGK1 succinylation at K191/K192, enhancing aerobic glycolysis in glioblastoma
PMID: 38441561
5
M2 macrophage-derived IL-6 enhances PDPK1-mediated PGK1 T243 phosphorylation to promote glycolysis and tumorigenesis in glioblastoma
PMID: 30029001
6
PRMT1-mediated PGK1 arginine methylation at R206 enhances S203 phosphorylation to promote glycolysis and colorectal cancer tumorigenesis
PMID: 38402202
7
Hyperphosphorylated PGK1 at S203 is identified as a drug target in esophageal squamous cell carcinoma progression
PMID: 36966136
8
PGK1 binds androgen receptors in granulosa cells, regulating glucose metabolism and ovulation-related genes with implications for polycystic ovary syndrome pathogenesis
PMID: 33096483
Disease Associationsβ“˜21
glycogen storage disease due to phosphoglycerate kinase 1 deficiencyOpen Targets
0.82Strong
Menkes diseaseOpen Targets
0.58Moderate
X-linked distal spinal muscular atrophy type 3Open Targets
0.56Moderate
occipital horn syndromeOpen Targets
0.56Moderate
neurodegenerative diseaseOpen Targets
0.51Moderate
genetic disorderOpen Targets
0.51Moderate
tuberculosisOpen Targets
0.37Weak
azoospermiaOpen Targets
0.26Weak
Ehlers-Danlos syndromeOpen Targets
0.18Weak
Intellectual disabilityOpen Targets
0.15Weak
Charcot-Marie-Tooth diseaseOpen Targets
0.14Weak
Au-Kline syndromeOpen Targets
0.12Weak
Charcot-Marie-Tooth disease type 2Open Targets
0.12Weak
Epileptic encephalopathyOpen Targets
0.12Weak
Profound global developmental delayOpen Targets
0.12Weak
breast cancerOpen Targets
0.11Weak
neoplasmOpen Targets
0.11Weak
optic atrophyOpen Targets
0.11Weak
cancerOpen Targets
0.11Weak
hepatocellular carcinomaOpen Targets
0.11Weak
Phosphoglycerate kinase 1 deficiencyUniProt
Pathogenic Variants17
NM_000291.4(PGK1):c.491A>T (p.Asp164Val)Pathogenic
Glycogen storage disease due to phosphoglycerate kinase 1 deficiency|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 164
NM_000291.4(PGK1):c.756+5G>ALikely pathogenic
Glycogen storage disease due to phosphoglycerate kinase 1 deficiency|not provided
β˜…β˜†β˜†β˜†2023
NM_000291.4(PGK1):c.1060G>C (p.Ala354Pro)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2021β†’ Residue 354
NM_000291.4(PGK1):c.943G>A (p.Asp315Asn)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2021β†’ Residue 315
NM_000291.4(PGK1):c.185G>A (p.Ser62Asn)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2016β†’ Residue 62
NM_000291.4(PGK1):c.150C>G (p.Cys50Trp)Likely pathogenic
Glycogen storage disease due to phosphoglycerate kinase 1 deficiency
β˜†β˜†β˜†β˜†2022β†’ Residue 50
NM_000291.4(PGK1):c.89A>C (p.Lys30Thr)Likely pathogenic
Male infertility due to obstructive azoospermia
β˜†β˜†β˜†β˜†2019β†’ Residue 30
NM_000291.4(PGK1):c.1132A>C (p.Thr378Pro)Pathogenic
Glycogen storage disease due to phosphoglycerate kinase 1 deficiency
β˜†β˜†β˜†β˜†2009β†’ Residue 378
NM_000291.4(PGK1):c.959G>A (p.Ser320Asn)Pathogenic
Glycogen storage disease due to phosphoglycerate kinase 1 deficiency
β˜†β˜†β˜†β˜†2006β†’ Residue 320
NM_000291.4(PGK1):c.140T>A (p.Ile47Asn)Pathogenic
Glycogen storage disease due to phosphoglycerate kinase 1 deficiency
β˜†β˜†β˜†β˜†2006β†’ Residue 47
NM_000291.4(PGK1):c.854A>T (p.Asp285Val)Pathogenic
Glycogen storage disease due to phosphoglycerate kinase 1 deficiency
β˜†β˜†β˜†β˜†1998β†’ Residue 285
NM_000291.4(PGK1):c.946T>C (p.Cys316Arg)Pathogenic
Glycogen storage disease due to phosphoglycerate kinase 1 deficiency
β˜†β˜†β˜†β˜†1992β†’ Residue 316
NM_000291.4(PGK1):c.473G>T (p.Gly158Val)Pathogenic
Glycogen storage disease due to phosphoglycerate kinase 1 deficiency
β˜†β˜†β˜†β˜†1992β†’ Residue 158
NM_000291.4(PGK1):c.263T>C (p.Leu88Pro)Pathogenic
Glycogen storage disease due to phosphoglycerate kinase 1 deficiency
β˜†β˜†β˜†β˜†1991β†’ Residue 88
NM_000291.4(PGK1):c.796_798delinsATG (p.Val266Met)Pathogenic
Glycogen storage disease due to phosphoglycerate kinase 1 deficiency
β˜†β˜†β˜†β˜†1981β†’ Residue 266
NM_000291.4(PGK1):c.617G>C (p.Arg206Pro)Pathogenic
Glycogen storage disease due to phosphoglycerate kinase 1 deficiency
β˜†β˜†β˜†β˜†1980β†’ Residue 206
NM_000291.4(PGK1):c.802G>A (p.Asp268Asn)Pathogenic
Glycogen storage disease due to phosphoglycerate kinase 1 deficiency
β˜†β˜†β˜†β˜†1980β†’ Residue 268
View on ClinVar β†—
Related Genes
CSTF3Protein interaction100%LDHAProtein interaction100%PGDProtein interaction100%ALDOAProtein interaction99%BPGMProtein interaction99%GAPDHProtein interaction99%
Tissue Expression6 tissues
Brain
100%
Heart
99%
Lung
72%
Bone Marrow
47%
Liver
47%
Ovary
27%
Gene Interaction Network
Click a node to explore
PGK1CSTF3LDHAPGDALDOABPGMGAPDH
PROTEIN STRUCTURE
Preparing viewer…
PDB2WZB Β· 1.47 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.29Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.11 [0.05–0.29]
RankingsWhere PGK1 stands among ~20K protein-coding genes
  • #970of 20,598
    Most Researched334 Β· top 5%
  • #2,314of 5,498
    Most Pathogenic Variants17
  • #1,041of 17,882
    Most Constrained (LOEUF)0.29 Β· top 10%
Genes detectedPGK1
Sources retrieved26 papers
Response timeβ€”
πŸ“„ Sources
26β–Ό
1
Hypoxia-induced downregulation of PGK1 crotonylation promotes tumorigenesis by coordinating glycolysis and the TCA cycle.
PMID: 39134530
Nat Commun Β· 2024
1.00
2
O-GlcNAcylation of PGK1 coordinates glycolysis and TCA cycle to promote tumor growth.
PMID: 31911580
Nat Commun Β· 2020
0.90
3
HIF1Ξ±/ATF3 partake in PGK1 K191/K192 succinylation by modulating P4HA1/succinate signaling in glioblastoma.
PMID: 38441561
Neuro Oncol Β· 2024
0.80
4
Macrophage-Associated PGK1 Phosphorylation Promotes Aerobic Glycolysis and Tumorigenesis.
PMID: 30029001
Mol Cell Β· 2018
0.70
5
The long noncoding RNA glycoLINC assembles a lower glycolytic metabolon to promote glycolysis.
PMID: 35081364
Mol Cell Β· 2022
0.64