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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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PGK2
phosphoglycerate kinase 2
Chromosome 6 · 6p12.3
NCBI Gene: 5232Ensembl: ENSG00000170950.6HGNC: HGNC:8898UniProt: A0A140VJR3
49PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Kinase
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingextracellular exosomenucleussperm fibrous sheathazoospermiaspermatogenic failure 3spermatogenic failure 55spermatogenic failure 83
✦AI Summary

PGK2 (phosphoglycerate kinase 2) is a testis-specific glycolytic enzyme that catalyzes the reversible conversion of 1,3-diphosphoglycerate to 3-phosphoglycerate 1. Unlike the ubiquitous somatic PGK1, PGK2 is an intronless processed gene expressed exclusively in late spermatogenesis 1, likely as a compensatory mechanism when PGK1 is silenced in male germ cells 1. PGK2 expression is tightly regulated through tissue-specific transcriptional mechanisms involving testis-specific factors (PBX4, PREP1, CREM, SP3) binding to promoter and enhancer elements 2, accompanied by DNA demethylation and chr6 remodeling during primary spermatocyte development 3. PGK2 is essential for normal sperm motility and male fertility 2, with lactylation at multiple lysine residues (particularly K220) modulating its enzymatic activity and glycolytic flux 4. In asthenozoospermia, reduced PGK2 lactylation correlates with decreased enzyme activity and impaired sperm motility 4. Clinically, seminal PGK2 protein levels and testicular PGK2 expression serve as predictive biomarkers for sperm retrieval success in non-obstructive azoospermia patients undergoing micro-TESE 56, with expression also correlating with retrieved sperm quality 6.

Sources cited
1
PGK2 is an intronless processed gene expressed in late spermatogenesis, likely compensating for PGK1 silencing in male germ cells
PMID: 3453121
2
PGK2 expression is regulated by testis-specific transcription factors (PBX4, PREP1, CREM, SP3) and is critical for normal sperm motility
PMID: 17875925
3
PGK2 transcriptional activation involves DNA demethylation, chromatin remodeling, and nucleosome reconfiguration during spermatogenesis
PMID: 24000349
4
PGK2 lysine lactylation, particularly at K220, regulates its enzymatic activity and affects sperm motility in asthenozoospermia
PMID: 41192556
5
Seminal PGK2 protein levels can predict sperm retrieval success in non-obstructive azoospermia patients
PMID: 35930251
6
Testicular PGK2 expression predicts both sperm retrieval success and quality of retrieved sperm in NOA patients
PMID: 33507524
Disease Associationsⓘ20
azoospermiaOpen Targets
0.10Suggestive
spermatogenic failure 3Open Targets
0.07Suggestive
spermatogenic failure 55Open Targets
0.07Suggestive
spermatogenic failure 83Open Targets
0.07Suggestive
spermatogenic failure 7Open Targets
0.06Suggestive
spermatogenic failure 16Open Targets
0.06Suggestive
spermatogenic failure 21Open Targets
0.06Suggestive
spermatogenic failure 29Open Targets
0.06Suggestive
spermatogenic failure 79Open Targets
0.06Suggestive
partial chromosome Y deletionOpen Targets
0.06Suggestive
spermatogenic failure 10Open Targets
0.06Suggestive
spermatogenic failure 11Open Targets
0.06Suggestive
spermatogenic failure 58Open Targets
0.06Suggestive
spermatogenic failure 19Open Targets
0.06Suggestive
spermatogenic failure 43Open Targets
0.06Suggestive
spermatogenic failure 45Open Targets
0.06Suggestive
spermatogenic failure 49Open Targets
0.06Suggestive
spermatogenic failure 82Open Targets
0.06Suggestive
spermatogenic failure 64Open Targets
0.06Suggestive
spermatogenic failure 70Open Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CSTF3Protein interaction100%PGDProtein interaction100%BPGMProtein interaction99%PGAM4Protein interaction97%TALDO1Protein interaction97%PNMA8BProtein interaction96%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
50%
Ovary
0%
Liver
0%
Heart
0%
Lung
0%
Gene Interaction Network
Click a node to explore
PGK2CSTF3PGDBPGMPGAM4TALDO1PNMA8B
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt P07205
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.76LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.98 [0.53–1.76]
RankingsWhere PGK2 stands among ~20K protein-coding genes
  • #8,996of 20,598
    Most Researched49
  • #16,393of 17,882
    Most Constrained (LOEUF)1.76
Genes detectedPGK2
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
In vivo analysis of developmentally and evolutionarily dynamic protein-DNA interactions regulating transcription of the Pgk2 gene during mammalian spermatogenesis.
PMID: 17875925
Mol Cell Biol · 2007
1.00
2
Evaluation of PGK2 and ACR proteins in seminal plasma: suggestion of potential new biomarkers for prediction of sperm retrieval in non-obstructive azoospermia patients.
PMID: 35930251
Hum Fertil (Camb) · 2023
0.90
3
Lactylated Proteomic Analysis Reveals Functional Implications of Lysine Lactylation In Asthenozoospermia.
PMID: 41192556
Mol Cell Proteomics · 2025
0.80
4
Purification of human sperm-specific PGK2 and assay development for drug screening for potential non-hormonal contraceptives.
PMID: 41544992
Biochim Biophys Acta Proteins Proteom · 2026
0.70
5
Human testis-specific PGK gene lacks introns and possesses characteristics of a processed gene.
PMID: 3453121
Nature · 1987
0.60