HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PGM3
phosphoglucomutase 3
Chromosome 6 Β· 6q14.1
NCBI Gene: 5238Ensembl: ENSG00000013375.17HGNC: HGNC:8907UniProt: A0A494C0G1
88PubMed Papers
21Diseases
0Drugs
67Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
phosphoacetylglucosamine mutase activityprotein O-linked glycosylationUDP-N-acetylglucosamine biosynthetic processprotein N-linked glycosylationimmunodeficiency 23severe combined immunodeficiencycombined immunodeficiencyhyper-IgE syndrome
✦AI Summary

PGM3 (phosphoglucomutase 3) catalyzes the conversion of GlcNAc-6-P to GlcNAc-1-P, a critical step in UDP-GlcNAc biosynthesis 1. This nucleotide sugar serves as a donor substrate for protein N- and O-linked glycosylation pathways essential for normal immune function. Hypomorphic PGM3 mutations cause autosomal recessive immunodeficiency 23, characterized by impaired UDP-GlcNAc biosynthesis and abnormal tri- and tetra-antennary N-glycan structures 2. Clinically, PGM3 deficiency presents as a hyper-IgE syndrome with recurrent infections, atopy, eczema, and elevated serum IgE levels 3. Mechanistically, PGM3 insufficiency impairs CD4+ T cell proliferation and differentiation in a dose-dependent manner, with reduced naΓ―ve CD4+ T cell counts and altered Th cell subset development favoring Th1/Th2 while attenuating Th17/Treg responses 4. Disease severity correlates with residual PGM3 enzyme activity 4. Beyond immune regulation, PGM3 controls hexosamine synthesis flux and regulates lipogenic transcription factor SREBP-1 5. The broad clinical variability in disease penetrance and expressivity suggests complex interactions with additional signaling pathways, possibly including IL-6 receptor signaling 6.

Sources cited
1
PGM3 deficiency impairs glycosylation; UDP-GlcNAc is synthesized via glucose 6-phosphate metabolism
PMID: 27707936
2
Hypomorphic PGM3 mutations cause autosomal recessive hyper-IgE syndrome with impaired UDP-GlcNAc biosynthesis and abnormal N-glycan structures
PMID: 25365149
3
PGM3 mutations are associated with hyper-IgE syndromes characterized by atopic dermatitis, recurrent infections, and elevated IgE
PMID: 30264496
4
PGM3 insufficiency impairs CD4+ T cell proliferation and differentiation; disease severity correlates with residual PGM3 expression
PMID: 39776909
5
PGM3 controls hexosamine synthesis flux and regulates SREBP-1 activation
PMID: 40249802
6
PGM3 deficiency causes atopic phenotypes with variable disease penetrance; possible overlap with IL-6 receptor signaling
PMID: 37369151
Disease Associationsβ“˜21
immunodeficiency 23Open Targets
0.84Strong
severe combined immunodeficiencyOpen Targets
0.52Moderate
combined immunodeficiencyOpen Targets
0.46Moderate
hyper-IgE syndromeOpen Targets
0.46Moderate
genetic disorderOpen Targets
0.41Moderate
ImmunodeficiencyOpen Targets
0.37Weak
Intellectual disabilityOpen Targets
0.37Weak
immune system diseaseOpen Targets
0.37Weak
immunodeficiency diseaseOpen Targets
0.37Weak
allergic rhinitisOpen Targets
0.12Weak
Abruptio PlacentaeOpen Targets
0.08Suggestive
drug-induced lupus erythematosusOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.07Suggestive
hearing lossOpen Targets
0.06Suggestive
ovarian dysfunctionOpen Targets
0.06Suggestive
glioblastoma multiformeOpen Targets
0.06Suggestive
Blackfan-Diamond anemiaOpen Targets
0.06Suggestive
congenital neutropenia-myelofibrosis-nephromegaly syndromeOpen Targets
0.05Suggestive
Recurrent infections-myelofibrosis-nephromegaly syndromeOpen Targets
0.05Suggestive
acute erythroleukemiaOpen Targets
0.05Suggestive
Immunodeficiency 23UniProt
Pathogenic Variants67
NM_015599.3(PGM3):c.398_413del (p.Ser133fs)Pathogenic
not provided|Immunodeficiency 23|PGM3-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 133
NM_015599.3(PGM3):c.162del (p.Lys54fs)Pathogenic
Severe combined immunodeficiency disease|Immunodeficiency 23
β˜…β˜…β˜†β˜†2025β†’ Residue 54
NM_015599.3(PGM3):c.-2-185C>TPathogenic
Severe combined immunodeficiency disease|not provided|Immunodeficiency 23
β˜…β˜…β˜†β˜†2025
NM_015599.3(PGM3):c.1197_1201del (p.Arg399fs)Pathogenic
Immunodeficiency 23|PGM3-related disorder|Severe combined immunodeficiency disease
β˜…β˜…β˜†β˜†2025β†’ Residue 399
NM_015599.3(PGM3):c.1016AAG[1] (p.Glu340del)Pathogenic
Hyper-IgE syndrome|Immunodeficiency 23|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 340
NM_015599.3(PGM3):c.1474C>T (p.Arg492Ter)Pathogenic
Immunodeficiency 23|Severe combined immunodeficiency disease|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 492
NM_015599.3(PGM3):c.737A>G (p.Asn246Ser)Pathogenic
Immunodeficiency 23|Inborn genetic diseases|Severe combined immunodeficiency disease
β˜…β˜…β˜†β˜†2024β†’ Residue 246
NM_015599.3(PGM3):c.378dup (p.Arg127Ter)Pathogenic
Immunodeficiency 23|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 127
NM_015599.3(PGM3):c.1415_1442dup (p.Asn482fs)Pathogenic
Immunodeficiency 23
β˜…β˜…β˜†β˜†2024β†’ Residue 482
NM_015599.3(PGM3):c.64C>T (p.Gln22Ter)Pathogenic
Immunodeficiency 23
β˜…β˜…β˜†β˜†2024β†’ Residue 22
NM_015599.3(PGM3):c.310A>T (p.Arg104Ter)Pathogenic
Immunodeficiency 23
β˜…β˜…β˜†β˜†2024β†’ Residue 104
NM_015599.3(PGM3):c.1153_1157del (p.Met385fs)Pathogenic
Immunodeficiency 23
β˜…β˜…β˜†β˜†2024β†’ Residue 385
NM_015599.3(PGM3):c.43_46dup (p.Pro16fs)Pathogenic
Immunodeficiency 23
β˜…β˜†β˜†β˜†2026β†’ Residue 16
NM_015599.3(PGM3):c.1255_1277del (p.Asp418_Ala419insTer)Pathogenic
Immunodeficiency 23
β˜…β˜†β˜†β˜†2025β†’ Residue 418
NM_015599.3(PGM3):c.1501G>C (p.Glu501Gln)Likely pathogenic
Immunodeficiency 23
β˜…β˜†β˜†β˜†2025β†’ Residue 501
NM_015599.3(PGM3):c.1198_1202dup (p.Ala402fs)Pathogenic
Immunodeficiency 23
β˜…β˜†β˜†β˜†2025β†’ Residue 402
NM_015599.3(PGM3):c.-2-242_-2-241delPathogenic
Immunodeficiency 23
β˜…β˜†β˜†β˜†2025
NM_015599.3(PGM3):c.162dup (p.Ser55fs)Pathogenic
Immunodeficiency 23
β˜…β˜†β˜†β˜†2025β†’ Residue 55
NM_015599.3(PGM3):c.520C>T (p.Arg174Ter)Pathogenic
Immunodeficiency 23
β˜…β˜†β˜†β˜†2025β†’ Residue 174
NM_015599.3(PGM3):c.1214_1216delinsA (p.Leu405fs)Pathogenic
Severe combined immunodeficiency disease
β˜…β˜†β˜†β˜†2025β†’ Residue 405
View on ClinVar β†—
Related Genes
GMPPAProtein interaction100%GALEProtein interaction100%GFPT1Protein interaction100%GFPT2Protein interaction99%GPIProtein interaction99%DERAProtein interaction99%
Tissue Expression6 tissues
Liver
100%
Ovary
67%
Lung
49%
Bone Marrow
42%
Heart
37%
Brain
37%
Gene Interaction Network
Click a node to explore
PGM3GMPPAGALEGFPT1GFPT2GPIDERA
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt O95394
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.96LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.71 [0.53–0.96]
RankingsWhere PGM3 stands among ~20K protein-coding genes
  • #5,436of 20,598
    Most Researched88
  • #1,084of 5,498
    Most Pathogenic Variants67 Β· top quartile
  • #9,076of 17,882
    Most Constrained (LOEUF)0.96
Genes detectedPGM3
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Liver glucose metabolism in humans.
PMID: 27707936
Biosci Rep Β· 2016
1.00
2
Hyper IgE syndromes: clinical and molecular characteristics.
PMID: 30264496
Immunol Cell Biol Β· 2019
0.90
3
Rapid identification of primary atopic disorders (PAD) by a clinical landmark-guided, upfront use of genomic sequencing.
PMID: 39381601
Allergol Select Β· 2024
0.80
4
PGM3 insufficiency: a glycosylation disorder causing a notable T cell defect.
PMID: 39776909
Front Immunol Β· 2024
0.70
5
Hyper IgE Syndrome: Bridging the Gap Between Immunodeficiency, Atopy, and Allergic Diseases.
PMID: 40082265
Curr Allergy Asthma Rep Β· 2025
0.60