HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
26 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PHOX2B
paired like homeobox 2B
Chromosome 4 Β· 4p13
NCBI Gene: 8929Ensembl: ENSG00000109132.7HGNC: HGNC:9143UniProt: Q99453
158PubMed Papers
22Diseases
0Drugs
82Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
RESEARCH IMPACT
TrendingVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
regulation of transcription by RNA polymerase IIRNA polymerase II transcription regulatory region sequence-specific DNA bindingRNA polymerase II cis-regulatory region sequence-specific DNA bindingDNA-binding transcription activator activity, RNA polymerase II-specificcentral hypoventilation syndrome, congenital, 1, with or without Hirschsprung diseaseOndine syndromeneuroblastoma, susceptibility to, 2Hirschsprung disease-ganglioneuroblastoma syndrome
✦AI Summary

PHOX2B is a transcription factor essential for autonomic nervous system development, particularly in noradrenergic neuron populations including the locus coeruleus 1. It functions as a DNA-binding transcriptional activator that determines neurotransmitter phenotype by enhancing promoters of genes like dopamine beta-hydrolase and regulating cAMP-response elements [UniProt]. PHOX2B is critical for development of the retrotrapezoid nucleus (RTN), a medullary cluster of glutamatergic neurons that mediates central respiratory chemoreception and CO2 detection 2. It also controls enteric nervous system development and brainstem circuits governing feeding behaviors 34. Clinically, PHOX2B mutations cause congenital central hypoventilation syndrome (CCHS), characterized by deficient autonomic control of ventilation and global dysautonomia 5. Mutations impair RTN development, consequently disrupting the central respiratory chemoreflex 2. PHOX2B also serves as a diagnostic marker in Hirschsprung disease and is a predisposition gene for neuroblastoma, where it acts as a master transcriptional regulator defining the noradrenergic identity module essential for tumor development 67. PHOX2B immunohistochemistry provides highly sensitive and specific diagnostic utility in neuroblastoma 7. Recent immunotherapeutic approaches targeting PHOX2B-derived peptides show promise for neuroblastoma treatment 8.

Sources cited
1
PHOX2B mutations found in most CCHS patients; disease involves alveolar hypoventilation and autonomic dysfunction
PMID: 32958024
2
PHOX2B is a neuroblastoma-dependency gene and master transcriptional regulator; peptide-centric CAR targeting shows therapeutic potential
PMID: 37938771
3
PHOX2B mutations cause Hirschsprung disease; involved in enteric nervous system development
PMID: 27869805
4
PHOX2B required for retrotrapezoid nucleus development; mutations cause CCHS by impairing central respiratory chemoreflex
PMID: 35965033
5
PHOX2B defines noradrenergic identity module in neuroblastoma; neuroblastoma cells dependent on PHOX2B
PMID: 28740262
6
PHOX2B essential for autonomic nervous system development; associated with CCHS, Hirschsprung disease, and neuroblastoma; PHOX2B immunohistochemistry is diagnostic tool
PMID: 38458747
7
Phox2b marks medullary nuclei controlling orofacial movements for feeding
PMID: 34728601
8
PHOX2B is transcriptional determinant of neuronal identity; Phox2b-dependent neurons in retrotrapezoid nucleus detect CO2 and drive breathing
PMID: 19651649
Disease Associationsβ“˜22
central hypoventilation syndrome, congenital, 1, with or without Hirschsprung diseaseOpen Targets
0.82Strong
Ondine syndromeOpen Targets
0.80Strong
neuroblastoma, susceptibility to, 2Open Targets
0.72Strong
Hirschsprung disease-ganglioneuroblastoma syndromeOpen Targets
0.69Moderate
Haddad syndromeOpen Targets
0.68Moderate
neuroblastomaOpen Targets
0.65Moderate
central hypoventilation syndrome, congenitalOpen Targets
0.62Moderate
hereditary neoplastic syndromeOpen Targets
0.55Moderate
Inherited cancer-predisposing syndromeOpen Targets
0.55Moderate
Columnar Cell Hyperplasia of the BreastOpen Targets
0.38Weak
sudden infant death syndromeOpen Targets
0.38Weak
colorectal adenocarcinomaOpen Targets
0.37Weak
melanomaOpen Targets
0.37Weak
colon adenocarcinomaOpen Targets
0.37Weak
cutaneous melanomaOpen Targets
0.37Weak
Endometrial Endometrioid AdenocarcinomaOpen Targets
0.37Weak
lung carcinomaOpen Targets
0.37Weak
nodular melanomaOpen Targets
0.37Weak
skin basal cell carcinomaOpen Targets
0.37Weak
superficial spreading melanomaOpen Targets
0.37Weak
Central hypoventilation syndrome, congenital, 1UniProt
Neuroblastoma 2UniProt
Pathogenic Variants82
NM_003924.4(PHOX2B):c.729_749dup (p.Ala254_Ala260dup)Pathogenic
Congenital central hypoventilation|Central hypoventilation syndrome, congenital, 1, with or without Hirschsprung disease
β˜…β˜…β˜†β˜†2025β†’ Residue 254
NM_003924.4(PHOX2B):c.756_776dup (p.Ala254_Ala260dup)Pathogenic
not provided|Neuroblastoma, susceptibility to, 2;Central hypoventilation syndrome, congenital, 1, with or without Hirschsprung disease|PHOX2B-related disorder|Congenital central hypoventilation
β˜…β˜…β˜†β˜†2025β†’ Residue 254
NM_003924.4(PHOX2B):c.753_767dup (p.Ala256_Ala260dup)Pathogenic
Congenital central hypoventilation|Hereditary cancer-predisposing syndrome|not provided|Central hypoventilation syndrome, congenital, 1, with or without Hirschsprung disease|PHOX2B-related disorder|Central hypoventilation syndrome, congenital, 1, with or without Hirschsprung disease;Neuroblastoma, susceptibility to, 2
β˜…β˜…β˜†β˜†2025β†’ Residue 256
NM_003924.4(PHOX2B):c.422G>A (p.Arg141Gln)Pathogenic
Congenital central hypoventilation|Hereditary cancer-predisposing syndrome|Haddad syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 141
NM_003924.4(PHOX2B):c.249C>A (p.Tyr83Ter)Pathogenic
Haddad syndrome|Hereditary cancer-predisposing syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 83
NM_003924.4(PHOX2B):c.691_698dup (p.Gly234fs)Pathogenic
Haddad syndrome|Hereditary cancer-predisposing syndrome|not provided|PHOX2B-related disorder|Neuroblastoma, susceptibility to, 2
β˜…β˜…β˜†β˜†2025β†’ Residue 234
NM_003924.4(PHOX2B):c.741_755dup (p.Ala256_Ala260dup)Pathogenic
Congenital central hypoventilation|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2024β†’ Residue 256
NM_003924.4(PHOX2B):c.741_758dup (p.Ala255_Ala260dup)Pathogenic
not provided|Hereditary cancer-predisposing syndrome|Central hypoventilation syndrome, congenital, 1, with or without Hirschsprung disease|Congenital central hypoventilation
β˜…β˜…β˜†β˜†2024β†’ Residue 255
NM_003924.4(PHOX2B):c.242-1G>APathogenic
Hereditary cancer-predisposing syndrome|Haddad syndrome
β˜…β˜…β˜†β˜†2023
NM_003924.4(PHOX2B):c.42C>A (p.Tyr14Ter)Pathogenic
Hereditary cancer-predisposing syndrome|Haddad syndrome|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 14
NM_003924.4(PHOX2B):c.241+1G>ALikely pathogenic
Haddad syndrome|Neuroblastoma, susceptibility to, 2|PHOX2B-related disorder
β˜…β˜…β˜†β˜†2023
NM_003924.4(PHOX2B):c.765_779dup (p.Ala256_Ala260dup)Pathogenic
not provided|Congenital central hypoventilation|PHOX2B-related disorder|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2023β†’ Residue 256
NM_003924.4(PHOX2B):c.722_759del (p.Ala241fs)Pathogenic
Congenital central hypoventilation|not provided|PHOX2B-related disorder
β˜…β˜…β˜†β˜†2023β†’ Residue 241
NM_003924.4(PHOX2B):c.13G>T (p.Glu5Ter)Pathogenic
Haddad syndrome|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2021β†’ Residue 5
NM_003924.4(PHOX2B):c.866dup (p.Pro290fs)Pathogenic
not provided|Central hypoventilation syndrome, congenital, 1, with or without Hirschsprung disease;Neuroblastoma, susceptibility to, 2
β˜…β˜…β˜†β˜†2020β†’ Residue 290
NM_003924.4(PHOX2B):c.726_743dup (p.Ala255_Ala260dup)Pathogenic
not provided|Hereditary cancer-predisposing syndrome|PHOX2B-related disorder
β˜…β˜…β˜†β˜†2020β†’ Residue 255
NM_003924.4(PHOX2B):c.292C>T (p.Gln98Ter)Pathogenic
Congenital central hypoventilation|Hereditary cancer-predisposing syndrome
β˜…β˜…β˜†β˜†2020β†’ Residue 98
NM_003924.4(PHOX2B):c.738_776dup (p.Ala248_Ala260dup)Pathogenic
Congenital central hypoventilation|Hereditary cancer-predisposing syndrome|PHOX2B-related disorder
β˜…β˜…β˜†β˜†2020β†’ Residue 248
NM_003924.4(PHOX2B):c.767_768insGGCGGCGGCCGCGGC (p.Ala260_Gly261insAlaAlaAlaAlaAla)Pathogenic
Hereditary cancer-predisposing syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 260
NM_003924.4(PHOX2B):c.753_791dup (p.Ala266_Gly267insAlaAlaAlaAlaAlaAlaAlaGlyGlyLeuAlaAlaAla)Likely pathogenic
Central hypoventilation syndrome, congenital, 1, with or without Hirschsprung disease
β˜…β˜†β˜†β˜†2025β†’ Residue 266
View on ClinVar β†—
Related Genes
DBHProtein interaction83%HAND2Protein interaction83%EDN3Protein interaction79%RETProtein interaction78%ISL1Protein interaction77%THProtein interaction76%
Tissue Expression6 tissues
Liver
0%
Heart
0%
Brain
0%
Lung
0%
Ovary
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
PHOX2BDBHHAND2EDN3RETISL1TH
PROTEIN STRUCTURE
Preparing viewer…
PDB7MJA Β· 1.69 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.35Highly Constrained
pLIβ“˜
0.99Intolerant
Observed/Expected LoF0.07 [0.03–0.35]
RankingsWhere PHOX2B stands among ~20K protein-coding genes
  • #2,849of 20,598
    Most Researched158 Β· top quartile
  • #903of 5,498
    Most Pathogenic Variants82 Β· top quartile
  • #1,533of 17,882
    Most Constrained (LOEUF)0.35 Β· top 10%
Genes detectedPHOX2B
Sources retrieved26 papers
Response timeβ€”
πŸ“„ Sources
26β–Ό
1
Guidelines for diagnosis and management of congenital central hypoventilation syndrome.
PMID: 32958024
Orphanet J Rare Dis Β· 2020
1.00
2
Targeting of intracellular oncoproteins with peptide-centric CARs.
PMID: 37938771
Nature Β· 2023
0.90
3
Engineered human pluripotent-stem-cell-derived intestinal tissues with a functional enteric nervous system.
PMID: 27869805
Nat Med Β· 2017
0.80
4
IGF2BP1 induces neuroblastoma via a druggable feedforward loop with MYCN promoting 17q oncogene expression.
PMID: 37246217
Mol Cancer Β· 2023
0.76
5
Targeting SWI/SNF ATPases reduces neuroblastoma cell plasticity.
PMID: 39174852
EMBO J Β· 2024
0.72