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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PIGN
phosphatidylinositol glycan anchor biosynthesis class N
Chromosome 18 Β· 18q21.33
NCBI Gene: 23556Ensembl: ENSG00000197563.11HGNC: HGNC:8967UniProt: A0A1W2PNR0
44PubMed Papers
21Diseases
0Drugs
182Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
membranecytosolplasma membranemannose-ethanolamine phosphotransferase activitymultiple congenital anomalies-hypotonia-seizures syndrome 1Multiple congenital anomalies - hypotonia - seizures syndromegenetic disordermultiple congenital anomalies-hypotonia-seizures syndrome
✦AI Summary

PIGN (phosphatidylinositol glycan anchor biosynthesis class N) encodes an ethanolamine phosphate transferase that catalyzes a critical step in GPI-anchor biosynthesis by transferring ethanolamine phosphate to mannosyl intermediates [UniProt]. This enzyme functions in the endoplasmic reticulum and participates in the eighth step of GPI-anchor assembly, essential for anchoring proteins to the cell membrane. Beyond its canonical role in GPI biosynthesis, PIGN functions as a regulator of mitotic integrity. PIGN gene expression aberrations, characterized by partial intron retention causing frameshifts and premature termination, correlate with increased genomic instability and myelodysplastic syndrome progression 1. PIGN protein interacts with spindle assembly checkpoint protein MAD1 and regulates its expression during cell cycle progression, maintaining chr18 stability independent of TP53 pathways 1. Pathogenic PIGN mutations cause Multiple Congenital Anomalies-Hypotonia-Seizures Syndrome 1, reflecting the essential role of GPI-anchored proteins in development [NCBI Summary]. Additionally, PIGN is implicated in cardiomyopathies associated with inherited metabolic carbohydrate disorders, indicating cardiac complications may arise from disrupted GPI-anchor biosynthesis 2. Loss of PIGN function leads to GPI-anchor protein deficiency, which directly compromises cell surface protein localization and function, explaining the pleiotropic clinical manifestations observed in PIGN-related disorders.

Sources cited
1
PIGN gene expression aberrations associated with genomic instability, leukemic progression, and interaction with MAD1 spindle checkpoint protein during cell cycle regulation
PMID: 28187452
2
PIGN identified as one of 29 congenital disorders of glycosylation genes presenting with cardiomyopathies and cardiac defects
PMID: 37239976
⚠Limited data available β€” This gene has 2 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜21
multiple congenital anomalies-hypotonia-seizures syndrome 1Open Targets
0.81Strong
Multiple congenital anomalies - hypotonia - seizures syndromeOpen Targets
0.73Strong
genetic disorderOpen Targets
0.53Moderate
multiple congenital anomalies-hypotonia-seizures syndromeOpen Targets
0.52Moderate
Fryns syndromeOpen Targets
0.37Weak
placenta praeviaOpen Targets
0.31Weak
cervical carcinomaOpen Targets
0.28Weak
upper respiratory tract disorderOpen Targets
0.27Weak
Abnormal brain morphologyOpen Targets
0.27Weak
Neurodevelopmental delayOpen Targets
0.12Weak
schizophreniaOpen Targets
0.11Weak
endocrine system diseaseOpen Targets
0.07Suggestive
injuryOpen Targets
0.07Suggestive
peripheral vascular diseaseOpen Targets
0.07Suggestive
acute myeloid leukemiaOpen Targets
0.04Suggestive
anophthalmia plus syndromeOpen Targets
0.04Suggestive
joint diseaseOpen Targets
0.04Suggestive
anencephaly 2Open Targets
0.03Suggestive
Alzheimer diseaseOpen Targets
0.03Suggestive
Loss of consciousnessOpen Targets
0.03Suggestive
Multiple congenital anomalies-hypotonia-seizures syndrome 1UniProt
Pathogenic Variants182
NM_176787.5(PIGN):c.284G>A (p.Arg95Gln)Pathogenic
Multiple congenital anomalies-hypotonia-seizures syndrome 1|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 95
NM_176787.5(PIGN):c.661C>T (p.Arg221Ter)Pathogenic
not provided|Multiple congenital anomalies-hypotonia-seizures syndrome 1
β˜…β˜…β˜†β˜†2026β†’ Residue 221
NM_176787.5(PIGN):c.181G>T (p.Glu61Ter)Pathogenic
not provided|Multiple congenital anomalies-hypotonia-seizures syndrome 1
β˜…β˜…β˜†β˜†2026β†’ Residue 61
NM_176787.5(PIGN):c.817dup (p.Ala273fs)Pathogenic
Multiple congenital anomalies-hypotonia-seizures syndrome 1
β˜…β˜…β˜†β˜†2026β†’ Residue 273
NM_176787.5(PIGN):c.2399G>A (p.Gly800Glu)Pathogenic
Multiple congenital anomalies-hypotonia-seizures syndrome 1|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 800
NM_176787.5(PIGN):c.932T>G (p.Leu311Trp)Pathogenic
not provided|Multiple congenital anomalies-hypotonia-seizures syndrome 1|Inborn genetic diseases
β˜…β˜…β˜†β˜†2026β†’ Residue 311
NM_176787.5(PIGN):c.654T>G (p.His218Gln)Likely pathogenic
Multiple congenital anomalies-hypotonia-seizures syndrome 1|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 218
NM_176787.5(PIGN):c.1674+1G>CPathogenic
Multiple congenital anomalies-hypotonia-seizures syndrome 1|not provided
β˜…β˜…β˜†β˜†2025
NM_176787.5(PIGN):c.505C>T (p.Gln169Ter)Pathogenic
Multiple congenital anomalies-hypotonia-seizures syndrome 1
β˜…β˜…β˜†β˜†2025β†’ Residue 169
NM_176787.5(PIGN):c.2125C>T (p.Arg709Ter)Pathogenic
Multiple congenital anomalies-hypotonia-seizures syndrome 1
β˜…β˜…β˜†β˜†2025β†’ Residue 709
NM_176787.5(PIGN):c.2620-1G>APathogenic
Multiple congenital anomalies-hypotonia-seizures syndrome 1|not provided
β˜…β˜…β˜†β˜†2025
NM_176787.5(PIGN):c.283C>T (p.Arg95Trp)Pathogenic
not provided|Inborn genetic diseases|Multiple congenital anomalies-hypotonia-seizures syndrome 1
β˜…β˜…β˜†β˜†2025β†’ Residue 95
NM_176787.5(PIGN):c.2284-1G>CPathogenic
not provided|Multiple congenital anomalies-hypotonia-seizures syndrome 1
β˜…β˜…β˜†β˜†2025
NM_176787.5(PIGN):c.548_549+6delPathogenic
Multiple congenital anomalies-hypotonia-seizures syndrome 1|Multiple congenital anomalies-hypotonia-seizures syndrome|not provided|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025
NM_176787.5(PIGN):c.981dup (p.Met328fs)Pathogenic
not provided|Multiple congenital anomalies-hypotonia-seizures syndrome 1
β˜…β˜…β˜†β˜†2025β†’ Residue 328
NM_176787.5(PIGN):c.2126G>A (p.Arg709Gln)Pathogenic
Multiple congenital anomalies-hypotonia-seizures syndrome 1
β˜…β˜…β˜†β˜†2025β†’ Residue 709
NM_176787.5(PIGN):c.2397dup (p.Gly800fs)Pathogenic
Multiple congenital anomalies-hypotonia-seizures syndrome 1|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 800
NM_176787.5(PIGN):c.1837C>T (p.Arg613Ter)Pathogenic
not provided|Multiple congenital anomalies-hypotonia-seizures syndrome 1|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 613
NM_176787.5(PIGN):c.2354G>A (p.Arg785His)Likely pathogenic
not provided|Multiple congenital anomalies-hypotonia-seizures syndrome 1|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 785
NM_176787.5(PIGN):c.858G>A (p.Trp286Ter)Pathogenic
Multiple congenital anomalies-hypotonia-seizures syndrome 1|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 286
View on ClinVar β†—
Related Genes
PIGYShared pathway100%PIGOShared pathway100%PGAP4Shared pathway100%PIGZShared pathway100%CWH43Shared pathway100%PIGXShared pathway100%
Tissue Expression6 tissues
Heart
100%
Brain
51%
Bone Marrow
49%
Liver
49%
Ovary
49%
Lung
37%
Gene Interaction Network
Click a node to explore
PIGNPIGYPIGOPGAP4PIGZCWH43PIGX
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt O95427
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.46LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF1.05 [0.76–1.46]
RankingsWhere PIGN stands among ~20K protein-coding genes
  • #9,634of 20,598
    Most Researched44
  • #391of 5,498
    Most Pathogenic Variants182 Β· top 10%
  • #14,933of 17,882
    Most Constrained (LOEUF)1.46
Genes detectedPIGN
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Acute Postinfectious Glomerulonephritis.
PMID: 36880922
Pediatr Clin North Am Β· 2022
1.00
2
Post-infectious glomerulonephritis.
PMID: 28891413
Paediatr Int Child Health Β· 2017
0.90
3
Clinico-Pathogenic Similarities and Differences between Infection-Related Glomerulonephritis and C3 Glomerulopathy.
PMID: 37176142
Int J Mol Sci Β· 2023
0.80
4
Metabolic Cardiomyopathies and Cardiac Defects in Inherited Disorders of Carbohydrate Metabolism: A Systematic Review.
PMID: 37239976
Int J Mol Sci Β· 2023
0.70
5
PMID: 20301632
0.60