HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
5 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PIP4P2
phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2
Chromosome 8 · 8q21.3
NCBI Gene: 55529Ensembl: ENSG00000155099.9HGNC: HGNC:25452UniProt: Q8N4L2
30PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingphosphatidylinositol-4,5-bisphosphate 4-phosphatase activityphosphatidylinositol dephosphorylationlysosomal membraneschizophreniatrauma complicationinjuryArthropathy
✦AI Summary

PIP4P2 (encoding TMEM55A) is a phosphatidylinositol-4,5-bisphosphate 4-phosphatase that catalyzes the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PtdIns-4,5-P2) to phosphatidylinositol-4-phosphate (PtdIns-4-P) and phosphatidylinositol-5-phosphate (PI5P) 1. The enzyme exhibits strict substrate specificity, with no activity toward phosphatidylinositol 3,4,5-trisphosphate or other inositol phosphates. PIP4P2 positively regulates basal autophagy through its phosphatase activity 2. In alpha cells, TMEM55A regulates glucagon secretion by controlling intracellular PI5P levels and modulating cortical F-actin remodeling in response to oxidative stress, independent of calcium channel activity 1. Clinically, PIP4P2 shows prognostic significance in cancer. High PIP4P2 expression in gastric cancer tissue correlates with poor prognosis and reduced immunotherapy efficacy through PI3K/AKT pathway activation 3. In hepatocellular carcinoma, PIP4P2 is part of a 3-gene prognostic signature associated with microbiome-driven tumor heterogeneity and immune microenvironment composition 4. These findings establish PIP4P2 as a multifunctional lipid phosphatase with important roles in cellular metabolism, exocytosis, autophagy regulation, and cancer progression.

Sources cited
1
PIP4P2/TMEM55A catalyzes dephosphorylation of PtdIns-4,5-P2 to PI5P and regulates glucagon secretion through F-actin remodeling
PMID: 40140059
2
TMEM55A/PIP4P2 positively regulates basal autophagy as a phosphatidylinositol-4,5-bisphosphate 4-phosphatase
PMID: 38880622
3
PIP4P2 is an independent unfavorable prognostic factor in gastric cancer with high expression activating PI3K/AKT signaling and reducing immunotherapy efficacy
PMID: 37150296
4
PIP4P2 is part of a 3-gene prognostic risk signature for hepatocellular carcinoma outcome prediction
PMID: 37114494
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
schizophreniaOpen Targets
0.32Weak
trauma complicationOpen Targets
0.28Weak
ArthropathyOpen Targets
0.28Weak
injuryOpen Targets
0.28Weak
smoking initiationOpen Targets
0.21Weak
musculoskeletal system diseaseOpen Targets
0.08Suggestive
acute pancreatitisOpen Targets
0.04Suggestive
insomniaOpen Targets
0.03Suggestive
adolescent idiopathic scoliosisOpen Targets
0.03Suggestive
liver diseaseOpen Targets
0.02Suggestive
type 2 diabetes mellitusOpen Targets
0.02Suggestive
ventricular fibrillationOpen Targets
0.02Suggestive
heart valve diseaseOpen Targets
0.02Suggestive
chronic laryngitisOpen Targets
0.02Suggestive
hepatocellular carcinomaOpen Targets
0.01Suggestive
gastric cancerOpen Targets
0.01Suggestive
chronic kidney diseaseOpen Targets
0.01Suggestive
Ischemic strokeOpen Targets
0.01Suggestive
ulcerative colitisOpen Targets
0.00Suggestive
neoplasmOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PIK3R3Protein interaction100%PIK3R1Protein interaction100%PIK3CBProtein interaction100%PIK3CDProtein interaction100%PIK3CAProtein interaction100%PTENProtein interaction99%
Tissue Expression6 tissues
Brain
100%
Heart
94%
Bone Marrow
88%
Ovary
27%
Lung
24%
Liver
7%
Gene Interaction Network
Click a node to explore
PIP4P2PIK3R3PIK3R1PIK3CBPIK3CDPIK3CAPTEN
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q8N4L2
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.83LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.55 [0.38–0.83]
RankingsWhere PIP4P2 stands among ~20K protein-coding genes
  • #12,004of 20,598
    Most Researched30
  • #7,060of 17,882
    Most Constrained (LOEUF)0.83
Genes detectedPIP4P2
Sources retrieved5 papers
Response time—
📄 Sources
5
1
Intratumoral microbial heterogeneity affected tumor immune microenvironment and determined clinical outcome of HBV-related HCC.
PMID: 37114494
Hepatology · 2023
1.00
2
Epigenetic Modification-Associated Molecular Classification of Gastric Cancer.
PMID: 37150296
Lab Invest · 2023
0.80
3
Integrative RNA profiling of TBEV-infected neurons and astrocytes reveals potential pathogenic effectors.
PMID: 35685361
Comput Struct Biotechnol J · 2022
0.60
4
TMEM55A-mediated PI5P signalling regulates alpha cell actin depolymerisation and glucagon secretion.
PMID: 40140059
Diabetologia · 2025
0.40
5
CRISPRa Analysis of Phosphoinositide Phosphatases Shows That TMEM55A Is a Positive Regulator of Autophagy.
PMID: 38880622
Biol Pharm Bull · 2024
0.20