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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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PLEKHM1
pleckstrin homology and RUN domain containing M1
Chromosome 17 Β· 17q21.31
NCBI Gene: 9842Ensembl: ENSG00000225190.12HGNC: HGNC:29017UniProt: A0A8V8TPW0
35PubMed Papers
2Diseases
0Drugs
4Pathogenic Variants
FUNCTIONAL ROLE
Transporter
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindinglysosome localizationautophagosome-lysosome fusionlate endosome to lysosome transportOsteopetrosis, autosomal recessive 6Osteopetrosis, autosomal dominant 3
✦AI Summary

PLEKHM1 (pleckstrin homology and RUN domain containing M1) functions as a critical adaptor protein that facilitates autophagosome-lysosome fusion during autophagy 1. The protein promotes this fusion process by mediating the association between GABARAP family proteins and other autophagy machinery components, thereby enabling autophagic clearance of protein aggregates 1. PLEKHM1 localizes to lysosomes and plays a role in late endosome to lysosome transport and lysosome positioning 2. During respiratory syncytial virus infection, PLEKHM1 is recruited to cholesterol-rich lysosomes along with HOPS VPS39 to facilitate minus-end transport of autophagosomes and autolysosome formation 3. The protein has been implicated in sleep regulation, specifically daytime napping behavior 4. Disease-wise, mutations in PLEKHM1 cause autosomal recessive and dominant forms of osteopetrosis, a bone disorder characterized by defective bone resorption [disease associations noted]. Additionally, PLEKHM1 variants have been associated with progressive supranuclear palsy, a neurodegenerative disease, where functional regulatory variants disrupt transcriptional networks 5. The protein's role in autophagosome-lysosome fusion makes it essential for cellular homeostasis and proper clearance of cellular debris.

Sources cited
1
PLEKHM1 facilitates autophagosome-lysosome fusion by mediating association of GABARAPs and enabling autophagic clearance
PMID: 38009729
2
PLEKHM1 is involved in lysosomal targeting and positioning, though null mutations in Drosophila show no obvious autophagy defects
PMID: 35507305
3
PLEKHM1 is recruited to cholesterol-rich lysosomes during RSV infection to facilitate autolysosome formation
PMID: 39060258
4
PLEKHM1 is associated with daytime napping behavior in genome-wide association studies
PMID: 38177695
5
PLEKHM1 variants are implicated in progressive supranuclear palsy pathogenesis through disrupted transcriptional networks
PMID: 35981026
Disease Associationsβ“˜2
Osteopetrosis, autosomal dominant 3UniProt
Osteopetrosis, autosomal recessive 6UniProt
Pathogenic Variants4
NM_014798.3(PLEKHM1):c.94C>T (p.Gln32Ter)Likely pathogenic
Osteopetrosis, autosomal dominant 3
β˜…β˜†β˜†β˜†2024β†’ Residue 32
NM_014798.3(PLEKHM1):c.2140C>T (p.Arg714Cys)Pathogenic
Osteopetrosis, autosomal dominant 3
β˜†β˜†β˜†β˜†2018β†’ Residue 714
NM_014798.3(PLEKHM1):c.3053_3054del (p.Thr1018fs)Pathogenic
Osteopetrosis, autosomal dominant 3
β˜†β˜†β˜†β˜†2018β†’ Residue 1018
NM_014798.3(PLEKHM1):c.296+1G>APathogenic
Autosomal recessive osteopetrosis 6
β˜†β˜†β˜†β˜†2007
View on ClinVar β†—
Related Genes
VAMP8Protein interaction100%VPS11Protein interaction100%GABARAPProtein interaction96%TCIRG1Protein interaction96%GABARAPL1Protein interaction95%CA2Protein interaction92%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
PLEKHM1VAMP8VPS11GABARAPTCIRG1GABARAPL1CA2
PROTEIN STRUCTURE
Preparing viewer…
PDB5DPS Β· 2.00 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.43Moderately Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.32 [0.23–0.43]
RankingsWhere PLEKHM1 stands among ~20K protein-coding genes
  • #11,036of 20,598
    Most Researched35
  • #3,827of 5,498
    Most Pathogenic Variants4
  • #2,339of 17,882
    Most Constrained (LOEUF)0.43 Β· top quartile
Genes detectedPLEKHM1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Emerging views of mitophagy in immunity and autoimmune diseases.
PMID: 30951392
Autophagy Β· 2020
1.00
2
Exome sequencing identifies genes associated with sleep-related traits.
PMID: 38177695
Nat Hum Behav Β· 2024
0.90
3
Functional regulatory variants implicate distinct transcriptional networks in dementia.
PMID: 35981026
Science Β· 2022
0.80
4
TRIM22 facilitates autophagosome-lysosome fusion by mediating the association of GABARAPs and PLEKHM1.
PMID: 38009729
Autophagy Β· 2024
0.70
5
AlphaFold2 SLiM screen for LC3-LIR interactions in autophagy.
PMID: 40320752
Autophagy Β· 2025
0.60