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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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PLXNB3
plexin B3
Chromosome X · Xq28
NCBI Gene: 5365Ensembl: ENSG00000198753.13HGNC: HGNC:9105UniProt: A8K920
24PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Receptor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingsemaphorin receptor activityprotein domain specific bindingnegative regulation of cell adhesionNeurodevelopmental disorderautism spectrum disorderneoplasmsleep apnea
✦AI Summary

PLXNB3 (plexin B3) is an X-linked transmembrane receptor that functions as a semaphorin signaling platform with critical roles in cancer progression and cell migration. Primary function: PLXNB3 acts as a receptor for SEMA5A ligand, mediating axon guidance, cell migration, and invasive growth 12. Mechanism: PLXNB3 binding to SEMA5A activates MET receptor tyrosine kinase, which recruits SRC and focal adhesion kinase, triggering downstream signaling cascades that promote cell migration and invasion 2. In breast cancer, PLXNB3-MET-SRC signaling activates STAT3, a transcription factor that increases NANOG expression and drives breast cancer stem cell specification 2. The SEMA5A-PLXNB3 axis also enhances aerobic glycolysis (Warburg effect) in pancreatic ductal adenocarcinoma metastasis 3. Disease relevance: PLXNB3 expression is upregulated by hypoxia-inducible factor 1 (HIF-1) under intratumoral hypoxia and is highly expressed in estrogen receptor-negative breast cancer, correlating with tumor grade, stage, and patient mortality 1. PLXNB3 is enriched in triple-negative breast cancer and required for cell growth, invasion, and migration 4. Clinical significance: PLXNB3 knockdown impairs tumor formation and lung metastasis in orthotopic breast cancer models 1, positioning PLXNB3 as a potential therapeutic target for aggressive cancers with poor prognosis 43.

Sources cited
1
PLXNB3 is upregulated by HIF-1 under hypoxia, required for hypoxia-induced MET/SRC/FAK signaling and cancer stem cell specification, and its knockdown impairs tumor formation and lung metastasis
PMID: 36857181
2
PLXNB3 binds and activates MET receptor, triggering SRC and FAK activation; PLXNB3-MET-SRC signaling activates STAT3 to increase NANOG expression in hypoxic breast cancer stem cells
PMID: 37768037
3
PLXNB3 is a TNBC-enriched cell surface protein; siRNA and CRISPR knockdown demonstrate PLXNB3 is required for TNBC cell growth, invasion, and migration
PMID: 35981243
4
SEMA5A-PLXNB3 axis promotes PDAC liver metastasis outgrowth by enhancing the Warburg effect (aerobic glycolysis)
PMID: 36741230
5
PLXNB3 is somatically mutated in human cancers; c.1613G>A mutation in PLXNB3 extracellular domain prevents SEMA5A ligand binding, representing loss-of-function in cancer
PMID: 19462467
Disease Associationsⓘ20
Neurodevelopmental disorderOpen Targets
0.12Weak
autism spectrum disorderOpen Targets
0.11Weak
neoplasmOpen Targets
0.09Suggestive
sleep apneaOpen Targets
0.08Suggestive
hepatocellular carcinomaOpen Targets
0.07Suggestive
pachyonychia congenitaOpen Targets
0.07Suggestive
Sleep DisorderOpen Targets
0.06Suggestive
autoimmune diseaseOpen Targets
0.05Suggestive
congenital heart diseaseOpen Targets
0.05Suggestive
Alzheimer diseaseOpen Targets
0.04Suggestive
rheumatoid arthritisOpen Targets
0.03Suggestive
triple-negative breast cancerOpen Targets
0.03Suggestive
hypertensionOpen Targets
0.03Suggestive
Neurodevelopmental delayOpen Targets
0.02Suggestive
bone fractureOpen Targets
0.02Suggestive
breast cancerOpen Targets
0.02Suggestive
osteoporosisOpen Targets
0.02Suggestive
response to xenobiotic stimulusOpen Targets
0.02Suggestive
ACPA-positive rheumatoid arthritisOpen Targets
0.02Suggestive
systemic lupus erythematosusOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes

No related genes found for this gene.

Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network

No interaction data available for this gene.

PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q9ULL4
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.77LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.64 [0.53–0.77]
RankingsWhere PLXNB3 stands among ~20K protein-coding genes
  • #13,278of 20,598
    Most Researched24
  • #6,194of 17,882
    Most Constrained (LOEUF)0.77
Genes detectedPLXNB3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Plexin-B3 expression stimulates MET signaling, breast cancer stem cell specification, and lung metastasis.
PMID: 36857181
Cell Rep · 2023
1.00
2
Mechanisms of Breast Cancer Stem Cell Specification and Self-Renewal Mediated by Hypoxia-Inducible Factor 1.
PMID: 37768037
Stem Cells Transl Med · 2023
0.90
3
Cardiorespiratory fitness and targeted proteomics involved in brain and cardiovascular health in children with overweight/obesity.
PMID: 36622372
Eur J Sport Sci · 2023
0.80
4
Brain-wide transcriptome-based metabolic alterations in Parkinson's disease: human inter-region and human-experimental model correlations.
PMID: 36928892
Mol Omics · 2023
0.70
5
Glycoproteomics Identifies Plexin-B3 as a Targetable Cell Surface Protein Required for the Growth and Invasion of Triple-Negative Breast Cancer Cells.
PMID: 35981243
J Proteome Res · 2022
0.60