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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
POLRMT
RNA polymerase mitochondrial
Chromosome 19 Β· 19p13.3
NCBI Gene: 5442Ensembl: ENSG00000099821.15HGNC: HGNC:9200UniProt: O00411
138PubMed Papers
21Diseases
0Drugs
16Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
mitochondrial matrixprotein-containing complextranscription initiation at mitochondrial promotermitochondrioncombined oxidative phosphorylation deficiency 55neurodegenerative diseaseNeurodevelopmental disordersubstance-related disorder
✦AI Summary

POLRMT encodes the human mitochondrial RNA polymerase, a single-subunit enzyme that catalyzes DNA-dependent RNA synthesis from mitochondrial DNA (mtDNA) using ribonucleoside triphosphates as substrates 1. The enzyme functions as a component of the mitochondrial transcription initiation complex alongside TFAM and TFB2M, where TFAM recruits POLRMT to specific promoters and TFB2M induces conformational changes enabling promoter opening 2. Beyond transcription, POLRMT exhibits DNA primase activity, synthesizing short RNA primers necessary for lagging-strand DNA replication at the origin of light-strand replication 1. POLRMT demonstrates high transcriptional fidelity with an error rate of approximately 2Γ—10⁻⁡, comparable to replicative DNA polymerases 3. The enzyme's activity is regulated by post-translational modifications, including succinylation at lysine 622, which disrupts mtDNA binding and transcription factor interactions 4. Additionally, 7S RNA can inhibit transcription by inducing POLRMT dimerization, sequestering domains required for promoter recognition 5. Disease-causing variants in POLRMT cause combined oxidative phosphorylation deficiency 55, presenting with developmental delay, hypotonia, and intellectual disability due to impaired mitochondrial mRNA synthesis 1. POLRMT represents a therapeutic target, as specific small-molecule inhibitors show anti-tumor effects in cancer models 6.

Sources cited
1
POLRMT catalyzes DNA-dependent RNA synthesis from mtDNA and has primase activity; disease variants cause neurological phenotypes
PMID: 33602924
2
POLRMT functions in transcription initiation complex with TFAM and TFB2M
PMID: 38094251
3
POLRMT has high transcriptional fidelity with error rate of 2Γ—10⁻⁡
PMID: 28882896
4
POLRMT activity is regulated by succinylation at lysine 622
PMID: 38649537
5
7S RNA inhibits transcription by inducing POLRMT dimerization
PMID: 35662414
6
POLRMT is a therapeutic target with specific small-molecule inhibitors showing anti-tumor effects
PMID: 33328633
Disease Associationsβ“˜21
combined oxidative phosphorylation deficiency 55Open Targets
0.79Strong
neurodegenerative diseaseOpen Targets
0.47Moderate
Neurodevelopmental disorderOpen Targets
0.34Weak
substance-related disorderOpen Targets
0.12Weak
Alpers syndromeOpen Targets
0.12Weak
autosomal dominant progressive external ophthalmoplegiaOpen Targets
0.12Weak
mitochondrial DNA depletion syndrome 4aOpen Targets
0.12Weak
osteosarcomaOpen Targets
0.08Suggestive
non-small cell lung carcinomaOpen Targets
0.08Suggestive
prostate cancerOpen Targets
0.08Suggestive
colorectal carcinomaOpen Targets
0.07Suggestive
cancerOpen Targets
0.06Suggestive
endometrial carcinomaOpen Targets
0.06Suggestive
Duane retraction syndromeOpen Targets
0.05Suggestive
leukemiaOpen Targets
0.04Suggestive
neoplasmOpen Targets
0.04Suggestive
immunodeficiency 75Open Targets
0.03Suggestive
lung adenocarcinomaOpen Targets
0.03Suggestive
smoking initiationOpen Targets
0.03Suggestive
atherosclerosisOpen Targets
0.03Suggestive
Combined oxidative phosphorylation deficiency 55UniProt
Pathogenic Variants16
NM_005035.4(POLRMT):c.2775C>A (p.Cys925Ter)Pathogenic
Combined oxidative phosphorylation deficiency 55|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 925
NM_005035.4(POLRMT):c.983dup (p.Lys329fs)Likely pathogenic
Combined oxidative phosphorylation deficiency 55
β˜…β˜†β˜†β˜†2026β†’ Residue 329
NM_005035.4(POLRMT):c.2351C>T (p.Ser784Leu)Likely pathogenic
Combined oxidative phosphorylation deficiency 55
β˜…β˜†β˜†β˜†2026β†’ Residue 784
NM_005035.4(POLRMT):c.2732_2733delinsT (p.Ala911fs)Likely pathogenic
Combined oxidative phosphorylation deficiency 55
β˜…β˜†β˜†β˜†2025β†’ Residue 911
NM_005035.4(POLRMT):c.2041C>T (p.Gln681Ter)Likely pathogenic
Combined oxidative phosphorylation deficiency 55
β˜…β˜†β˜†β˜†2023β†’ Residue 681
NM_005035.4(POLRMT):c.954-1G>CLikely pathogenic
Combined oxidative phosphorylation deficiency 55
β˜…β˜†β˜†β˜†2023
NM_005035.4(POLRMT):c.1753C>T (p.Gln585Ter)Likely pathogenic
Combined oxidative phosphorylation deficiency 55
β˜…β˜†β˜†β˜†2023β†’ Residue 585
NM_005035.4(POLRMT):c.2424del (p.Cys809fs)Pathogenic
Neurodevelopmental disorder
β˜…β˜†β˜†β˜†2022β†’ Residue 809
NM_005035.4(POLRMT):c.2438T>C (p.Phe813Ser)Pathogenic
Combined oxidative phosphorylation deficiency 55
β˜†β˜†β˜†β˜†2025β†’ Residue 813
NM_005035.4(POLRMT):c.1940C>T (p.Pro647Leu)Pathogenic
Combined oxidative phosphorylation deficiency 55
β˜†β˜†β˜†β˜†2025β†’ Residue 647
NM_005035.4(POLRMT):c.1832C>T (p.Ser611Phe)Pathogenic
Combined oxidative phosphorylation deficiency 55
β˜†β˜†β˜†β˜†2022β†’ Residue 611
NM_005035.4(POLRMT):c.3037C>T (p.Arg1013Cys)Pathogenic
Combined oxidative phosphorylation deficiency 55
β˜†β˜†β˜†β˜†2022β†’ Residue 1013
NM_005035.4(POLRMT):c.445C>T (p.Gln149Ter)Pathogenic
Combined oxidative phosphorylation deficiency 55
β˜†β˜†β˜†β˜†2022β†’ Residue 149
NM_005035.4(POLRMT):c.2641-1G>CPathogenic
Combined oxidative phosphorylation deficiency 55
β˜†β˜†β˜†β˜†2022
NM_005035.4(POLRMT):c.748C>G (p.His250Asp)Pathogenic
Combined oxidative phosphorylation deficiency 55
β˜†β˜†β˜†β˜†2022β†’ Residue 250
NM_005035.4(POLRMT):c.1923C>G (p.Phe641Leu)Pathogenic
Combined oxidative phosphorylation deficiency 55
β˜†β˜†β˜†β˜†2022β†’ Residue 641
View on ClinVar β†—
Related Genes
TFB1MProtein interaction92%GABPAProtein interaction91%GABPB1Protein interaction91%ATXN8Protein interaction91%MRPL12Protein interaction90%SRFBP1Protein interaction90%
Tissue Expression6 tissues
Liver
100%
Ovary
67%
Lung
59%
Brain
55%
Heart
32%
Bone Marrow
28%
Gene Interaction Network
Click a node to explore
POLRMTTFB1MGABPAGABPB1ATXN8MRPL12SRFBP1
PROTEIN STRUCTURE
Preparing viewer…
PDB3SPA Β· 2.50 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.26LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF1.08 [0.93–1.26]
RankingsWhere POLRMT stands among ~20K protein-coding genes
  • #3,347of 20,598
    Most Researched138 Β· top quartile
  • #2,391of 5,498
    Most Pathogenic Variants16
  • #13,278of 17,882
    Most Constrained (LOEUF)1.26
Genes detectedPOLRMT
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
POLRMT mutations impair mitochondrial transcription causing neurological disease.
PMID: 33602924
Nat Commun Β· 2021
1.00
2
SUCLG1 restricts POLRMT succinylation to enhance mitochondrial biogenesis and leukemia progression.
PMID: 38649537
EMBO J Β· 2024
0.90
3
Small-molecule inhibitors of human mitochondrial DNA transcription.
PMID: 33328633
Nature Β· 2020
0.80
4
Non-coding 7S RNA inhibits transcription via mitochondrial RNA polymerase dimerization.
PMID: 35662414
Cell Β· 2022
0.70
5
UBASH3B-mediated MRPL12 Y60 dephosphorylation inhibits LUAD development by driving mitochondrial metabolism reprogramming.
PMID: 39343960
J Exp Clin Cancer Res Β· 2024
0.60