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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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PPM1B
protein phosphatase, Mg2+/Mn2+ dependent 1B
Chromosome 2 · 2p21
NCBI Gene: 5495Ensembl: ENSG00000138032.22HGNC: HGNC:9276UniProt: O75688
134PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
peptidyl-threonine dephosphorylationprotein serine/threonine phosphatase activitynegative regulation of canonical NF-kappaB signal transductionnegative regulation of defense response to viruscancerneurodegenerative diseasehypertrophic cardiomyopathyinfectious meningitis
✦AI Summary

PPM1B (protein phosphatase, Mg2+/Mn2+ dependent 1B) is a serine/threonine phosphatase belonging to the metal-dependent PPM family that functions as a single subunit enzyme binding manganese/magnesium ions in its active center 1. PPM1B exhibits broad substrate specificity, dephosphorylating CDK2, CDK6, PRKAA1, and PRKAA2, and plays critical roles in immune regulation by inhibiting TBK1-mediated antiviral signaling and terminating TNF-mediated NF-κB activation through IKBKB dephosphorylation 1. Mechanistically, PPM1B regulates multiple signaling pathways through targeted dephosphorylation. It dephosphorylates YBX1 at serine 314, modulating PANoptosis and chemoresistance in gastric cancer 2. PPM1B also regulates RIPK3 phosphorylation in necroptosis control 3 and participates in TGF-β pathway activation through BRISC-mediated K63 deubiquitination 4. Additionally, PPM1B forms functional complexes with RBM10 and YBX1 to regulate cancer cell proliferation 5. Clinically, PPM1B dysfunction associates with multiple diseases. Loss-of-function variants in PPM1B are linked to premature ovarian insufficiency through impaired folliculogenesis and ovulation 6. In gastric cancer, PPM1B downregulation promotes tumor growth and cell cycle progression via the TRIM25-mediated degradation pathway 7. PPM1B deubiquitination deficiency contributes to arterial stiffness in metabolic syndrome 4 and USP12-mediated PPM1B regulation affects lung tumor immunotherapy response 8.

Sources cited
1
PPM1B (protein phosphatase, Mg2+/Mn2+ dependent 1B) is a serine/threonine phosphatase belonging to the metal-dependent PPM family that functions as a single subunit enzyme binding manganese/magnesium ions in its active center .
PMID: 32650009
2
It dephosphorylates YBX1 at serine 314, modulating PANoptosis and chemoresistance in gastric cancer .
PMID: 38364962
3
PPM1B also regulates RIPK3 phosphorylation in necroptosis control and participates in TGF-β pathway activation through BRISC-mediated K63 deubiquitination .
PMID: 40586914
4
PPM1B also regulates RIPK3 phosphorylation in necroptosis control and participates in TGF-β pathway activation through BRISC-mediated K63 deubiquitination .
PMID: 39742393
5
Additionally, PPM1B forms functional complexes with RBM10 and YBX1 to regulate cancer cell proliferation .
PMID: 38246397
6
Loss-of-function variants in PPM1B are linked to premature ovarian insufficiency through impaired folliculogenesis and ovulation .
PMID: 36732629
7
In gastric cancer, PPM1B downregulation promotes tumor growth and cell cycle progression via the TRIM25-mediated degradation pathway .
PMID: 39979355
8
PPM1B deubiquitination deficiency contributes to arterial stiffness in metabolic syndrome and USP12-mediated PPM1B regulation affects lung tumor immunotherapy response .
PMID: 34381028
Disease Associationsⓘ20
cancerOpen Targets
0.51Moderate
neurodegenerative diseaseOpen Targets
0.30Weak
hypertrophic cardiomyopathyOpen Targets
0.28Weak
infectious meningitisOpen Targets
0.23Weak
ovarian dysfunctionOpen Targets
0.21Weak
injuryOpen Targets
0.08Suggestive
gastric cancerOpen Targets
0.08Suggestive
infectionOpen Targets
0.06Suggestive
neoplasmOpen Targets
0.06Suggestive
breast cancerOpen Targets
0.05Suggestive
squamous cell carcinomaOpen Targets
0.03Suggestive
cervical carcinomaOpen Targets
0.02Suggestive
cholelithiasisOpen Targets
0.02Suggestive
AIDS dementiaOpen Targets
0.02Suggestive
gliomaOpen Targets
0.02Suggestive
preeclampsiaOpen Targets
0.02Suggestive
gallstonesOpen Targets
0.02Suggestive
lung cancerOpen Targets
0.02Suggestive
osteosarcomaOpen Targets
0.02Suggestive
urinary bladder carcinomaOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PPP2CAProtein interaction99%PREPLProtein interaction97%SLC3A1Protein interaction97%ISG15Protein interaction96%MAP3K7Protein interaction95%CAMKMTProtein interaction94%
Tissue Expression6 tissues
Brain
100%
Liver
49%
Lung
43%
Heart
42%
Ovary
35%
Bone Marrow
32%
Gene Interaction Network
Click a node to explore
PPM1BPPP2CAPREPLSLC3A1ISG15MAP3K7CAMKMT
PROTEIN STRUCTURE
Preparing viewer…
PDB2P8E · 1.82 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.64LoF Tolerant
pLIⓘ
0.21Tolerant
Observed/Expected LoF0.42 [0.28–0.64]
RankingsWhere PPM1B stands among ~20K protein-coding genes
  • #3,464of 20,598
    Most Researched134 · top quartile
  • #4,564of 17,882
    Most Constrained (LOEUF)0.64
Genes detectedPPM1B
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Landscape of pathogenic mutations in premature ovarian insufficiency.
PMID: 36732629
Nat Med · 2023
1.00
2
Metal-dependent Ser/Thr protein phosphatase PPM family: Evolution, structures, diseases and inhibitors.
PMID: 32650009
Pharmacol Ther · 2020
0.90
3
Modulation of YBX1-mediated PANoptosis inhibition by PPM1B and USP10 confers chemoresistance to oxaliplatin in gastric cancer.
PMID: 38364962
Cancer Lett · 2024
0.80
4
BRISC-Mediated PPM1B-K63 Deubiquitination and Subsequent TGF-β Pathway Activation Promote High-Fat/High-Sucrose Diet-Induced Arterial Stiffness.
PMID: 39742393
Circ Res · 2025
0.70
5
TRAF3IP2-AS1 Deficiency Induces Necroptosis to Promote Pancreatic Cancer Liver Metastasis.
PMID: 40586914
Cancer Res · 2025
0.60