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26 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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PPP1CA
protein phosphatase 1 catalytic subunit alpha
Chromosome 11 · 11q13.2
NCBI Gene: 5499Ensembl: ENSG00000172531.17HGNC: HGNC:9281UniProt: A0A140VJS9
458PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
Highly StudiedTrending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cytoplasmprotein stabilizationnucleuspositive regulation of termination of RNA polymerase II transcription, poly(A)-coupledneurodegenerative diseaseAlzheimer diseaseParkinson diseaselysosomal storage disease
✦AI Summary

PPP1CA (protein phosphatase 1 catalytic subunit alpha) is a major serine/threonine phosphatase that regulates diverse cellular processes through protein dephosphorylation 1. The enzyme functions as part of holoenzyme complexes with regulatory subunits that determine substrate specificity and cellular localization 1. In transcriptional regulation, PPP1CA within the PNUTS-PP1 complex promotes RNA polymerase II pause release by dephosphorylating multiple substrates including MEPCE, thereby sustaining global transcriptional activation 2. The phosphatase plays critical roles in cancer progression through multiple mechanisms. In hepatocellular carcinoma, PPP1CA promotes tumorigenesis by dephosphorylating YAP1, facilitating its nuclear translocation and activation of Hippo pathway target oncogenes 3. Similarly, in colorectal cancer, PPP1CA stabilization leads to YAP dephosphorylation and enhanced tumor progression 4. In renal cancer, PPP1CA interaction with the PDHK1-241aa peptide inhibits AKT dephosphorylation, activating the AKT-mTOR pathway 5. PPP1CA also regulates autophagy through TFEB dephosphorylation, with methylation at K141 by SUV39H2 disrupting this function in intervertebral disc degeneration 6. These findings establish PPP1CA as a key regulatory phosphatase with significant therapeutic potential across multiple diseases.

Sources cited
1
PPP1CA is a major serine/threonine phosphatase that functions in holoenzyme complexes with regulatory subunits
PMID: 25620225
2
PNUTS-PP1 complex promotes RNA polymerase II pause release and sustains global transcriptional activation
PMID: 39603240
3
PPP1CA promotes hepatocellular carcinoma progression by dephosphorylating YAP1 and activating Hippo pathway targets
PMID: 40513845
4
PPP1CA stabilization leads to YAP dephosphorylation in colorectal cancer progression
PMID: 38057879
5
PPP1CA interaction with PDHK1-241aa inhibits AKT dephosphorylation and activates AKT-mTOR pathway in renal cancer
PMID: 38360682
6
PPP1CA regulates autophagy through TFEB dephosphorylation, disrupted by K141 methylation by SUV39H2
PMID: 37605006
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.52Moderate
Alzheimer diseaseOpen Targets
0.33Weak
Parkinson diseaseOpen Targets
0.33Weak
lysosomal storage diseaseOpen Targets
0.27Weak
multiple sclerosisOpen Targets
0.25Weak
hepatocellular carcinomaOpen Targets
0.09Suggestive
breast cancerOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.07Suggestive
type 2 diabetes mellitusOpen Targets
0.07Suggestive
glioblastoma multiformeOpen Targets
0.05Suggestive
colorectal carcinomaOpen Targets
0.05Suggestive
cryopyrin-associated periodic syndromeOpen Targets
0.04Suggestive
cancerOpen Targets
0.04Suggestive
Abnormality of the skeletal systemOpen Targets
0.03Suggestive
viral diseaseOpen Targets
0.03Suggestive
breast neoplasmOpen Targets
0.03Suggestive
thyroid cancerOpen Targets
0.02Suggestive
meningiomaOpen Targets
0.02Suggestive
posterior cortical atrophyOpen Targets
0.02Suggestive
colon adenocarcinomaOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
WDR33Protein interaction100%CPSF1Protein interaction100%EIF2S1Protein interaction100%PPP1R15AProtein interaction100%PPP1R15BProtein interaction100%WDR82Protein interaction100%
Tissue Expression6 tissues
Liver
100%
Lung
99%
Bone Marrow
80%
Heart
71%
Brain
62%
Ovary
30%
Gene Interaction Network
Click a node to explore
PPP1CAWDR33CPSF1EIF2S1PPP1R15APPP1R15BWDR82
PROTEIN STRUCTURE
Preparing viewer…
PDB6ZEG · 1.09 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.55Moderately Constrained
pLIⓘ
0.86Intermediate
Observed/Expected LoF0.35 [0.23–0.55]
RankingsWhere PPP1CA stands among ~20K protein-coding genes
  • #596of 20,598
    Most Researched458 · top 5%
  • #3,561of 17,882
    Most Constrained (LOEUF)0.55 · top quartile
Genes detectedPPP1CA
Sources retrieved26 papers
Response time—
📄 Sources
26▼
1
Integrated analysis of single-cell and bulk RNA sequencing data reveals a pan-cancer stemness signature predicting immunotherapy response.
PMID: 35488273
Genome Med · 2022
1.00
2
Lysine methylation of PPP1CA by the methyltransferase SUV39H2 disrupts TFEB-dependent autophagy and promotes intervertebral disc degeneration.
PMID: 37605006
Cell Death Differ · 2023
0.90
3
A novel peptide PDHK1-241aa encoded by circPDHK1 promotes ccRCC progression via interacting with PPP1CA to inhibit AKT dephosphorylation and activate the AKT-mTOR signaling pathway.
PMID: 38360682
Mol Cancer · 2024
0.80
4
Genotype and phenotype correlation of
PMID: 38272663
J Med Genet · 2024
0.76
5
CircGPRC5A enhances colorectal cancer progress by stabilizing PPP1CA and inducing YAP dephosphorylation.
PMID: 38057879
J Exp Clin Cancer Res · 2023
0.70