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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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PPP2R5D
protein phosphatase 2 regulatory subunit B'delta
Chromosome 6 · 6p21.1
NCBI Gene: 5528Ensembl: ENSG00000112640.17HGNC: HGNC:9312UniProt: Q14738
129PubMed Papers
21Diseases
0Drugs
27Pathogenic Variants
FUNCTIONAL ROLE
Highly Constrained
CLINICAL
OMIM Disease Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cytosolprotein phosphatase regulator activityprotein bindingnucleoplasmHogue-Janssens syndrome 1Intellectual disabilitycancerneurodegenerative disease
✦AI Summary

PPP2R5D encodes the B56δ regulatory subunit of protein phosphatase 2A (PP2A), a major serine/threonine phosphatase that modulates substrate selectivity and catalytic activity 1. This subunit is highly expressed in the brain and plays crucial roles in neuronal development, learning, and memory 1. PP2A opposes growth-promoting kinases of the PIK3CA/AKT/mTOR and RAS/MAPK pathways, with decreased activity promoting cellular growth 2. The PPP2R5D-PP2A holoenzyme regulates neuronal signaling and maintains neurons through specific substrate dephosphorylation, including modulation of liprin-α1 liquid-liquid phase separation via phosphorylation control 3. Pathogenic de novo missense variants in PPP2R5D cause Houge-Janssens syndrome type 1, characterized by neurodevelopmental delay, macrocephaly, intellectual disability, autism spectrum disorders, epilepsy, and behavioral problems 24. Patient-derived neurons show hyperproliferation and increased neurite outgrowth, suggesting a dominant-negative mechanism rather than loss of function 5. The most common pathogenic variant is E198K, which disrupts pathways critical for neuronal development and synaptic signaling 45. Allele-specific knockdown approaches show therapeutic promise for reversing neuronal defects 5.

Sources cited
1
PPP2R5D encodes B56δ subunit of PP2A, highly expressed in brain, involved in learning and memory
PMID: 32074998
2
PP2A opposes growth-promoting kinases, decreased activity promotes growth, causes Houge-Janssens syndrome
PMID: 40555839
3
PPP2R5D-PP2A holoenzyme regulates liprin-α1 liquid-liquid phase separation via phosphorylation
PMID: 40484382
4
Pathogenic variants cause neurodevelopmental disorder with macrocephaly, epilepsy, E198K is most common variant
PMID: 34448180
5
Patient neurons show hyperproliferation and increased neurite outgrowth, allele-specific knockdown shows therapeutic potential
PMID: 40340253
Disease Associationsⓘ21
Hogue-Janssens syndrome 1Open Targets
0.81Strong
Intellectual disabilityOpen Targets
0.65Moderate
cancerOpen Targets
0.53Moderate
neurodegenerative diseaseOpen Targets
0.53Moderate
genetic disorderOpen Targets
0.52Moderate
genetic developmental and epileptic encephalopathyOpen Targets
0.41Moderate
chronic myelogenous leukemiaOpen Targets
0.37Weak
complex neurodevelopmental disorderOpen Targets
0.37Weak
Neurodevelopmental disorderOpen Targets
0.35Weak
Neurodevelopmental delayOpen Targets
0.35Weak
Global developmental delayOpen Targets
0.34Weak
Neurodevelopmental abnormalityOpen Targets
0.34Weak
SeizureOpen Targets
0.34Weak
EncephalopathyOpen Targets
0.27Weak
autism spectrum disorderOpen Targets
0.09Suggestive
hepatitis C virus infectionOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.08Suggestive
dilated cardiomyopathyOpen Targets
0.07Suggestive
age-related macular degenerationOpen Targets
0.07Suggestive
X-linked retinal dysplasiaOpen Targets
0.06Suggestive
Houge-Janssens syndrome 1UniProt
Pathogenic Variants27
NM_006245.4(PPP2R5D):c.621G>C (p.Trp207Cys)Pathogenic
Houge-Janssens syndrome 1|not provided
★★☆☆2026→ Residue 207
NM_006245.4(PPP2R5D):c.598G>A (p.Glu200Lys)Pathogenic
Houge-Janssens syndrome 1|not provided|Inborn genetic diseases|PPP2R5D-related disorder
★★☆☆2025→ Residue 200
NM_006245.4(PPP2R5D):c.625C>T (p.His209Tyr)Pathogenic
not provided|Houge-Janssens syndrome 1
★★☆☆2025→ Residue 209
NM_006245.4(PPP2R5D):c.619T>A (p.Trp207Arg)Pathogenic
Houge-Janssens syndrome 1|not provided
★★☆☆2025→ Residue 207
NM_006245.4(PPP2R5D):c.602C>G (p.Pro201Arg)Pathogenic
Houge-Janssens syndrome 1|not provided
★★☆☆2025→ Residue 201
NM_006245.4(PPP2R5D):c.619T>C (p.Trp207Arg)Pathogenic
not provided|Houge-Janssens syndrome 1|Genetic developmental and epileptic encephalopathy
★★☆☆2025→ Residue 207
NM_006245.4(PPP2R5D):c.752A>C (p.Asp251Ala)Pathogenic
Inborn genetic diseases|Houge-Janssens syndrome 1|not provided|Seizure
★★☆☆2025→ Residue 251
NM_006245.4(PPP2R5D):c.1258G>A (p.Glu420Lys)Pathogenic
not provided|Inborn genetic diseases|Houge-Janssens syndrome 1
★★☆☆2025→ Residue 420
NM_006245.4(PPP2R5D):c.758G>C (p.Arg253Pro)Pathogenic
Houge-Janssens syndrome 1|not provided|Neurodevelopmental abnormality
★★☆☆2025→ Residue 253
NM_006245.4(PPP2R5D):c.751G>C (p.Asp251His)Pathogenic
Houge-Janssens syndrome 1|not provided
★★☆☆2024→ Residue 251
NM_006245.4(PPP2R5D):c.589G>A (p.Glu197Lys)Pathogenic
not provided|Houge-Janssens syndrome 1|PPP2R5D-related disorder
★★☆☆2024→ Residue 197
NM_006245.4(PPP2R5D):c.621G>T (p.Trp207Cys)Pathogenic
not provided
★★☆☆2023→ Residue 207
NM_006245.4(PPP2R5D):c.620G>T (p.Trp207Leu)Pathogenic
not provided
★☆☆☆2025→ Residue 207
NM_006245.4(PPP2R5D):c.619T>G (p.Trp207Gly)Pathogenic
Houge-Janssens syndrome 1
★☆☆☆2025→ Residue 207
NM_006245.4(PPP2R5D):c.608T>G (p.Leu203Arg)Likely pathogenic
Houge-Janssens syndrome 1
★☆☆☆2024→ Residue 203
NM_006245.4(PPP2R5D):c.391T>G (p.Phe131Val)Likely pathogenic
Houge-Janssens syndrome 1
★☆☆☆2024→ Residue 131
NM_006245.4(PPP2R5D):c.608T>C (p.Leu203Pro)Likely pathogenic
Houge-Janssens syndrome 1
★☆☆☆2023→ Residue 203
NM_006245.4(PPP2R5D):c.649T>C (p.Phe217Leu)Likely pathogenic
Houge-Janssens syndrome 1
★☆☆☆2023→ Residue 217
NM_006245.4(PPP2R5D):c.434A>T (p.Lys145Met)Pathogenic
Houge-Janssens syndrome 1
★☆☆☆2022→ Residue 145
NM_006245.4(PPP2R5D):c.570_605del (p.Gly191_Thr202del)Likely pathogenic
Houge-Janssens syndrome 1
★☆☆☆2021→ Residue 191
View on ClinVar ↗
Related Genes
PPME1Protein interaction97%SGO1Protein interaction96%MEA1Protein interaction95%KLHDC3Protein interaction95%REC8Protein interaction91%BCL2Protein interaction91%
Tissue Expression6 tissues
Brain
100%
Ovary
60%
Lung
45%
Liver
44%
Heart
40%
Bone Marrow
27%
Gene Interaction Network
Click a node to explore
PPP2R5DPPME1SGO1MEA1KLHDC3REC8BCL2
PROTEIN STRUCTURE
Preparing viewer…
PDB8U1X · 2.70 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.23Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.14 [0.09–0.23]
RankingsWhere PPP2R5D stands among ~20K protein-coding genes
  • #3,634of 20,598
    Most Researched129 · top quartile
  • #1,892of 5,498
    Most Pathogenic Variants27
  • #656of 17,882
    Most Constrained (LOEUF)0.23 · top 5%
Genes detectedPPP2R5D
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Large-scale discovery of novel genetic causes of developmental disorders.
PMID: 25533962
Nature · 2015
1.00
2
Houge-Janssens syndrome.
PMID: 40555839
Eur J Hum Genet · 2025
0.90
3
Clinical-Genetic Approach to Conditions with Macrocephaly and ASD/Behaviour Abnormalities: Variants in
PMID: 40282429
Genes (Basel) · 2025
0.80
4
PPP2R5D-Related Intellectual Disability and Neurodevelopmental Delay: A Review of the Current Understanding of the Genetics and Biochemical Basis of the Disorder.
PMID: 32074998
Int J Mol Sci · 2020
0.70
5
Pathogenic de novo variants in PPP2R5C cause a neurodevelopmental disorder within the Houge-Janssens syndrome spectrum.
PMID: 39978342
Am J Hum Genet · 2025
0.60