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6 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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PRKRIP1
PRKR interacting protein 1
Chromosome 7 · 7q22.1
NCBI Gene: 79706Ensembl: ENSG00000128563.14HGNC: HGNC:21894UniProt: Q9H875
36PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
renal system processprotein bindingactin cytoskeletoncytosolAbnormality of the skeletal systeminsomniatype 2 diabetes mellitusgestational diabetes
✦AI Summary

PRKRIP1 (PRKR interacting protein 1) is a splicing factor essential for pre-mRNA splicing. Structurally, PRKRIP1 forms a 100-Å α-helix within the human spliceosome that links the U2 snRNP to the catalytic center 1. During the C-to-C* transition, PRKRIP1 is recruited as a step II factor alongside other splicing components to facilitate exon ligation 2. Additionally, PRKRIP1 exhibits double-stranded RNA binding capacity and inhibits protein kinase R (PKR) activation through a dsRNA-independent mechanism 3. Clinically, PRKRIP1 has emerged as a significant prognostic biomarker in colorectal cancer (CRC). High PRKRIP1 expression is associated with poor prognosis, with elevated levels correlating with apoptosis-related gene sets 4. A four-gene prognostic model incorporating PRKRIP1 accurately predicted patient outcomes, with PRKRIP1 expression correlating with immune cell infiltration in the tumor microenvironment 5. Furthermore, novel autoantibodies against PRKRIP1 have been identified as potential biomarkers for chr7 kidney disease, suggesting PRKRIP1's relevance beyond cancer pathology 6.

Sources cited
1
PRKRIP1 forms a 100-Å α-helix linking U2 snRNP to the catalytic center in the spliceosome C* complex
PMID: 28502770
2
PRKRIP1 is recruited as a step II factor during C-to-C* transition for exon ligation
PMID: 35705093
3
PRKRIP1 (C114) binds double-stranded RNA and inhibits PKR activation through a dsRNA-independent mechanism
PMID: 12679338
4
High PRKRIP1 expression associates with poor prognosis in colorectal cancer and correlates with apoptosis-related pathways
PMID: 36192001
5
PRKRIP1 is part of a prognostic model for colorectal cancer and correlates with immune cell infiltration
PMID: 39549020
6
Novel autoantibodies against PRKRIP1 are detected in chronic kidney disease as potential biomarkers
PMID: 21183621
Disease Associationsⓘ20
Abnormality of the skeletal systemOpen Targets
0.30Weak
insomniaOpen Targets
0.09Suggestive
type 2 diabetes mellitusOpen Targets
0.08Suggestive
gestational diabetesOpen Targets
0.07Suggestive
glomerulonephritisOpen Targets
0.06Suggestive
ovarian neoplasmOpen Targets
0.03Suggestive
diabetes mellitusOpen Targets
0.02Suggestive
gastrointestinal diseaseOpen Targets
0.02Suggestive
osteoarthritis, hipOpen Targets
0.02Suggestive
osteoarthritis, kneeOpen Targets
0.02Suggestive
total joint arthroplastyOpen Targets
0.02Suggestive
preeclampsiaOpen Targets
0.02Suggestive
metabolic syndrome XOpen Targets
0.02Suggestive
alcohol drinkingOpen Targets
0.02Suggestive
colorectal carcinomaOpen Targets
0.02Suggestive
colorectal cancerOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.00Suggestive
neuroendocrine neoplasmOpen Targets
0.00Suggestive
cancerOpen Targets
0.00Suggestive
Renal insufficiencyOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PPIEProtein interaction100%XAB2Protein interaction100%RBM22Protein interaction100%CDC5LProtein interaction100%BCAS2Protein interaction100%PRPF19Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
69%
Liver
61%
Lung
48%
Heart
44%
Brain
36%
Gene Interaction Network
Click a node to explore
PRKRIP1PPIEXAB2RBM22CDC5LBCAS2PRPF19
PROTEIN STRUCTURE
Preparing viewer…
PDB8C6J · 2.80 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.31LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.90 [0.62–1.31]
RankingsWhere PRKRIP1 stands among ~20K protein-coding genes
  • #10,845of 20,598
    Most Researched36
  • #13,822of 17,882
    Most Constrained (LOEUF)1.31
Genes detectedPRKRIP1
Sources retrieved6 papers
Response time—
📄 Sources
6▼
1
An Atomic Structure of the Human Spliceosome.
PMID: 28502770
Cell · 2017
1.00
2
Mechanism of exon ligation by human spliceosome.
PMID: 35705093
Mol Cell · 2022
0.83
3
Identification of a Novel 4-gene Prognostic Model Related to Neutrophil Extracellular Traps for Colorectal Cancer.
PMID: 39549020
Turk J Gastroenterol · 2024
0.67
4
Protein microarrays discover angiotensinogen and PRKRIP1 as novel targets for autoantibodies in chronic renal disease.
PMID: 21183621
Mol Cell Proteomics · 2011
0.50
5
PRKRIP1, A Splicing Complex Factor, Is a Marker of Poor Prognosis in Colorectal Cancer.
PMID: 36192001
Anticancer Res · 2022
0.33