HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PRM3
protamine 3
Chromosome 16 · 16p13.13
NCBI Gene: 58531Ensembl: ENSG00000178257.4HGNC: HGNC:13732UniProt: Q9NNZ6
9PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
flagellated sperm motilitycytoplasmnucleuschromosomeinflammatory bowel diseaseneurodegenerative diseaseprimary biliary cirrhosispsoriasis
✦AI Summary

PRM3 (protamine 3) is a small acidic protein expressed during spermatogenesis that plays a role in sperm function. Unlike the canonical protamines PRM1 and PRM2, which condense sperm DNA through histone substitution, PRM3 has a distinctive acidic character and cytoplasmic localization in elongated spermatids rather than nuclear localization 1. The Prm3 gene is an intronless member of the protamine gene cluster present across mammals, with mRNA first detected in early round spermatids and protein expression delayed until late spermatids 12. Functionally, PRM3 regulates sperm motility; male mice with Prm3 gene disruption exhibited reduced sperm motility compared to wild-type controls 1. However, this motility reduction did not significantly impair fertility in standard one-to-one mating tests, though competitive mating experiments suggested PRM3 contributes to male reproductive success 1. The developmental timing of PRM3 expression parallels other spermatogenic proteins, with translation of Prm3 mRNA developmentally delayed similar to Prm1, Prm2, and Tnp2 1. PRM3's specific role in flagellar function and sperm motility distinguishes it functionally from other protamines focused on chr16 condensation.

Sources cited
1
PRM3 is an acidic protein localized to cytoplasm affecting sperm motility; Prm3 gene disruption reduces sperm motility; Prm3 mRNA detected in early round spermatids with delayed protein translation
PMID: 18256328
2
Prm3 is an intronless gene in the protamine cluster encoding a 104-amino acid acidic polypeptide; expressed in haploid spermatogenic stages
PMID: 8521723
⚠Limited data available — This gene has 2 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
inflammatory bowel diseaseOpen Targets
0.31Weak
neurodegenerative diseaseOpen Targets
0.23Weak
primary biliary cirrhosisOpen Targets
0.21Weak
psoriasisOpen Targets
0.18Weak
Crohn's diseaseOpen Targets
0.17Weak
multiple sclerosisOpen Targets
0.14Weak
sclerosing cholangitisOpen Targets
0.14Weak
ulcerative colitisOpen Targets
0.14Weak
ankylosing spondylitisOpen Targets
0.14Weak
psoriasis vulgarisOpen Targets
0.10Suggestive
azoospermiaOpen Targets
0.08Suggestive
type 1 diabetes mellitusOpen Targets
0.08Suggestive
basal cell carcinomaOpen Targets
0.07Suggestive
dermatitisOpen Targets
0.07Suggestive
spermatogenic failure 3Open Targets
0.06Suggestive
spermatogenic failure 55Open Targets
0.06Suggestive
skin diseaseOpen Targets
0.06Suggestive
asthmaOpen Targets
0.06Suggestive
spermatogenic failure 83Open Targets
0.06Suggestive
spermatogenic failure 7Open Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SPEM3Shared pathway100%TEKTIP1Shared pathway100%CFAP144Shared pathway100%CIMIP2AShared pathway100%CFAP77Shared pathway100%SPMIP10Shared pathway100%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
0%
Ovary
0%
Heart
0%
Liver
0%
Brain
0%
Gene Interaction Network
Click a node to explore
PRM3SPEM3TEKTIP1CFAP144CIMIP2ACFAP77SPMIP10
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9NNZ6
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.91LoF Tolerant
pLIⓘ
0.14Tolerant
Observed/Expected LoF1.29 [0.30–1.91]
RankingsWhere PRM3 stands among ~20K protein-coding genes
  • #17,420of 20,598
    Most Researched9
  • #17,333of 17,882
    Most Constrained (LOEUF)1.91
Genes detectedPRM3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Prm3, the fourth gene in the mouse protamine gene cluster, encodes a conserved acidic protein that affects sperm motility.
PMID: 18256328
Biol Reprod · 2008
1.00
2
The rat Prm3 gene is an intronless member of the protamine gene cluster and is expressed in haploid male germ cells.
PMID: 8521723
Cytogenet Cell Genet · 1995
0.90
3
Purification, structural characterization and anticancer activity of the novel polysaccharides from Rhynchosia minima root.
PMID: 26256325
Carbohydr Polym · 2015
0.80
4
Characterization of promoter 3 of the human thromboxane A receptor gene. A functional AP-1 and octamer motif are required for basal promoter activity.
PMID: 15691336
FEBS J · 2005
0.70
5
Regulation of the human thromboxane A2 receptor gene by Sp1, Egr1, NF-E2, GATA-1, and Ets-1 in megakaryocytes.
PMID: 18698092
J Lipid Res · 2008
0.60