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GeneE
25 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PRPS1
phosphoribosyl pyrophosphate synthetase 1
Chromosome X Β· Xq22.3
NCBI Gene: 5631Ensembl: ENSG00000147224.13HGNC: HGNC:9462UniProt: B7ZB02
185PubMed Papers
24Diseases
0Drugs
45Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedKinase
RESEARCH IMPACT
Trending
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
urate biosynthetic processnervous system developmentribose phosphate diphosphokinase activityprotein bindingphosphoribosylpyrophosphate synthetase superactivityCharcot-Marie-Tooth disease X-linked recessive 5Arts syndromeX-linked nonsyndromic hearing loss
✦AI Summary

PRPS1 encodes phosphoribosyl pyrophosphate synthetase 1, a key enzyme catalyzing the synthesis of phosphoribosylpyrophosphate (PRPP), the essential substrate for de novo nucleotide and NAD synthesis 1. The enzyme functions as a homodimer and is regulated through multiple post-translational modifications: O-GlcNAcylation by OGT promotes hexamer formation and relieves product-mediated feedback inhibition, boosting activity 1, while cytosolic CLOCK acetylation at K29 stabilizes PRPS1/2 and enhances nucleotide synthesis 2. PRPS1 mutations cause a disease spectrum determined by residual enzyme activity 3. Gain-of-function mutations result in PRPS1 superactivity, causing hyperuricemia, ataxia, and postlingual hearing loss 4. Loss-of-function mutations produce graded severity: mild deficiency causes X-linked nonsyndromic deafness (DFNX-2), moderate deficiency causes Charcot-Marie-Tooth disease-5 (CMTX5), and severe deficiency causes Arts syndrome with optic/peripheral neuropathy and CNS impairment 4. In acute lymphoblastic leukemia, PRPS1 mutations occur in 65% of early relapses, conferring drug resistance 5. S-adenosylmethionine supplementation shows promise for PRPS1-deficient patients 4. PRPS1 downregulation has been identified as a diagnostic biomarker for Kawasaki disease 6.

Sources cited
1
PRPS1 is O-GlcNAcylated by OGT, triggering hexamer formation and enhancing nucleotide synthesis activity; Arts syndrome PRPS1 mutations show decreased O-GlcNAcylation
PMID: 37308732
2
Cytosolic CLOCK acetylates PRPS1/2 at K29, blocking degradation and promoting de novo nucleotide synthesis in hepatocellular carcinoma
PMID: 36646788
3
PRPS1 mutations cause spectrum from nonsyndromic deafness to syndromic hearing loss with variable presentation; gain-of-function causes superactivity with hearing impairment
PMID: 23190330
4
PRPS1 mutations produce graded disease spectrum: mild deficiency causes DFNX-2, moderate causes CMTX5, severe causes Arts syndrome; S-adenosylmethionine supplementation may alleviate symptoms
PMID: 26089585
5
PRPS1 mutations occur in 65% of early acute lymphoblastic leukemia relapses and confer chemotherapy drug resistance
PMID: 31697823
6
PRPS1 is downregulated in Kawasaki disease with diagnostic value as an m6A-related hub gene
PMID: 39988181
Disease Associationsβ“˜24
phosphoribosylpyrophosphate synthetase superactivityOpen Targets
0.79Strong
Charcot-Marie-Tooth disease X-linked recessive 5Open Targets
0.78Strong
Arts syndromeOpen Targets
0.77Strong
X-linked nonsyndromic hearing lossOpen Targets
0.73Strong
Lethal ataxia with deafness and optic atrophyOpen Targets
0.68Moderate
X-linked hereditary sensory and autonomic neuropathy with deafnessOpen Targets
0.67Moderate
X-linked Charcot-Marie-Tooth disease type 5Open Targets
0.66Moderate
Charcot-Marie-Tooth diseaseOpen Targets
0.63Moderate
Retinal dystrophyOpen Targets
0.53Moderate
inherited retinal dystrophyOpen Targets
0.46Moderate
hearing lossOpen Targets
0.45Moderate
genetic disorderOpen Targets
0.42Moderate
PRPS1 deficiency disorderOpen Targets
0.40Weak
deafnessOpen Targets
0.37Weak
neurodegenerative diseaseOpen Targets
0.22Weak
cerebellar ataxiaOpen Targets
0.19Weak
nephrocalcinosisOpen Targets
0.17Weak
nephrolithiasisOpen Targets
0.17Weak
acute lymphoblastic leukemiaOpen Targets
0.10Weak
melanomaOpen Targets
0.09Suggestive
ARTS syndromeUniProt
Charcot-Marie-Tooth disease, X-linked recessive, 5UniProt
Deafness, X-linked, 1UniProt
Phosphoribosylpyrophosphate synthetase superactivityUniProt
Pathogenic Variants45
NM_002764.4(PRPS1):c.586C>T (p.Arg196Trp)Pathogenic
Retinal dystrophy|Charcot-Marie-Tooth Neuropathy X|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 196
NM_002764.4(PRPS1):c.319A>G (p.Ile107Val)Likely pathogenic
not provided|Charcot-Marie-Tooth Neuropathy X|Arts syndrome;Charcot-Marie-Tooth disease X-linked recessive 5
β˜…β˜…β˜†β˜†2025β†’ Residue 107
NM_002764.4(PRPS1):c.506C>T (p.Ser169Leu)Pathogenic
Charcot-Marie-Tooth Neuropathy X|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 169
NM_002764.4(PRPS1):c.640C>T (p.Arg214Trp)Pathogenic
Hearing loss;Retinal dystrophy|Retinal dystrophy|Phosphoribosylpyrophosphate synthetase superactivity|Arts syndrome|Charcot-Marie-Tooth Neuropathy X
β˜…β˜…β˜†β˜†2024β†’ Residue 214
NM_002764.4(PRPS1):c.343A>G (p.Met115Val)Pathogenic
Hearing loss, X-linked 1|Charcot-Marie-Tooth disease X-linked recessive 5|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 115
NM_002764.4(PRPS1):c.344T>C (p.Met115Thr)Likely pathogenic
Charcot-Marie-Tooth disease X-linked recessive 5|Charcot-Marie-Tooth Neuropathy X
β˜…β˜…β˜†β˜†2024β†’ Residue 115
NM_002764.4(PRPS1):c.250C>T (p.Arg84Trp)Pathogenic
Charcot-Marie-Tooth Neuropathy X|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 84
NM_002764.4(PRPS1):c.341A>G (p.Asn114Ser)Likely pathogenic
Phosphoribosylpyrophosphate synthetase superactivity|Inborn genetic diseases|Arts syndrome
β˜…β˜…β˜†β˜†2020β†’ Residue 114
NM_002764.4(PRPS1):c.155A>C (p.Asp52Ala)Likely pathogenic
Phosphoribosylpyrophosphate synthetase superactivity
β˜…β˜†β˜†β˜†2025β†’ Residue 52
NM_002764.4(PRPS1):c.851G>T (p.Cys284Phe)Likely pathogenic
Hearing loss, X-linked 1
β˜…β˜†β˜†β˜†2025β†’ Residue 284
NM_002764.4(PRPS1):c.826C>G (p.Pro276Ala)Likely pathogenic
Hearing loss, X-linked 1
β˜…β˜†β˜†β˜†2025β†’ Residue 276
NM_002764.4(PRPS1):c.838A>G (p.Lys280Glu)Likely pathogenic
Hearing loss, X-linked 1
β˜…β˜†β˜†β˜†2025β†’ Residue 280
NM_002764.4(PRPS1):c.122+1G>ALikely pathogenic
Charcot-Marie-Tooth Neuropathy X
β˜…β˜†β˜†β˜†2024
NM_002764.4(PRPS1):c.74T>C (p.Leu25Pro)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 25
NM_002764.4(PRPS1):c.621del (p.Val208fs)Pathogenic
Charcot-Marie-Tooth Neuropathy X
β˜…β˜†β˜†β˜†2023β†’ Residue 208
NM_002764.4(PRPS1):c.575T>A (p.Ile192Asn)Likely pathogenic
Hearing loss, X-linked 1
β˜…β˜†β˜†β˜†2023β†’ Residue 192
NM_002764.4(PRPS1):c.127G>A (p.Glu43Lys)Likely pathogenic
Arts syndrome
β˜…β˜†β˜†β˜†2023β†’ Residue 43
NM_002764.4(PRPS1):c.547G>C (p.Asp183His)Likely pathogenic
Phosphoribosylpyrophosphate synthetase superactivity|Arts syndrome
β˜…β˜†β˜†β˜†2022β†’ Residue 183
NM_002764.4(PRPS1):c.570del (p.Ala190_Leu191insTer)Pathogenic
Charcot-Marie-Tooth Neuropathy X
β˜…β˜†β˜†β˜†2022β†’ Residue 190
NM_002764.4(PRPS1):c.462G>A (p.Trp154Ter)Pathogenic
Charcot-Marie-Tooth Neuropathy X
β˜…β˜†β˜†β˜†2022β†’ Residue 154
View on ClinVar β†—
Related Genes
RPIAProtein interaction99%NUDT5Protein interaction98%PPATProtein interaction97%RBKSProtein interaction96%GARTProtein interaction96%TKTL2Protein interaction95%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
88%
Liver
74%
Lung
56%
Ovary
53%
Heart
51%
Gene Interaction Network
Click a node to explore
PRPS1RPIANUDT5PPATRBKSGARTTKTL2
PROTEIN STRUCTURE
Preparing viewer…
PDB8DBI Β· 2.00 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.28Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.06 [0.02–0.28]
RankingsWhere PRPS1 stands among ~20K protein-coding genes
  • #2,334of 20,598
    Most Researched185 Β· top quartile
  • #1,419of 5,498
    Most Pathogenic Variants45
  • #992of 17,882
    Most Constrained (LOEUF)0.28 Β· top 10%
Genes detectedPRPS1
Sources retrieved25 papers
Response timeβ€”
πŸ“„ Sources
25β–Ό
1
Direct stimulation of de novo nucleotide synthesis by O-GlcNAcylation.
PMID: 37308732
Nat Chem Biol Β· 2024
1.00
2
A 20-year Clinical and Genetic Neuromuscular Cohort Analysis in Lebanon: An International Effort.
PMID: 34602496
J Neuromuscul Dis Β· 2022
0.90
3
Therapy-induced mutations drive the genomic landscape of relapsed acute lymphoblastic leukemia.
PMID: 31697823
Blood Β· 2020
0.80
4
PMID: 20301738
0.70
5
Localization of human phosphoribosylpyrophosphate synthetase subunit I and II genes (PRPS1 and PRPS2) to different regions of the X chromosome and assignment of two PRPS1-related genes to autosomes.
PMID: 2536962
Somat Cell Mol Genet Β· 1989
0.60