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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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PRR9
proline rich 9
Chromosome 1 · 1q21.3
NCBI Gene: 574414Ensembl: ENSG00000203783.5HGNC: HGNC:32057UniProt: Q5T870
1PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Swiss-Prot Reviewed
androgenetic alopeciaulcerative colitisGriscelli diseaseGriscelli syndrome type 3
✦AI Summary

PRR9 (proline rich 9) is a circadian clock-associated gene with roles in both temporal regulation and immune/inflammatory responses. In plants, PRR9 functions as a core component of the circadian clock network, with its expression regulated at multiple levels including transcriptional control by CCA1 and posttranscriptional regulation through alternative splicing 1. PRR9 expression is modulated by small molecule inhibitors of casein kinase 1, suggesting involvement in protein degradation pathways critical for circadian period regulation 2. PRR9 also shows evolutionary conservation in genetic linkage with light signaling genes across plant lineages, though these linkages have been lost in grasses 3. Beyond circadian function, PRR9 has emerged as a susceptibility locus for autoimmune disease. Genome-wide association studies identified PRR9_LOR as significantly associated with juvenile idiopathic arthritis (JIA), representing a novel autoimmune disease susceptibility locus 4. PRR9 variants are also associated with psoriasis in Pakistani populations 5. At the cellular level, PRR9 is expressed in specific keratinocyte subpopulations in psoriatic skin, particularly in PRR9+ cells of the stratum corneum that exhibit elevated expression of inflammatory markers including DEFB4B, S100A8, and S100A12 6. Notably, PRR9 has undergone degeneration in some cetacean lineages during evolution to aquatic environments 7, and shows reduced expression in supraventricular tachycardia 8.

Sources cited
1
PRR9_LOR is a novel juvenile idiopathic arthritis susceptibility locus identified through genome-wide association meta-analysis
PMID: 28719732
2
PRR9 shows evolutionarily conserved genetic linkage with circadian clock genes CCA1/LHY across plant lineages
PMID: 35674369
3
PRR9 expression is regulated by casein kinase 1-mediated protein degradation and its downregulation affects circadian period length
PMID: 31529098
4
PRR9 undergoes posttranscriptional regulation through alternative splicing controlled by the spliceosomal protein SKIP
PMID: 22942380
5
PRR9 shows nominally significant association with psoriasis in Pakistani populations
PMID: 25481369
6
PRR9+ keratinocytes in psoriatic stratum corneum express elevated inflammatory markers DEFB4B, S100A8, and S100A12
PMID: 38279596
7
PRR9 has degenerated in subgroups of cetaceans during evolution to aquatic lifestyle
PMID: 34112911
8
PRR9 shows reduced expression in supraventricular tachycardia samples
PMID: 38509727
Disease Associationsⓘ20
androgenetic alopeciaOpen Targets
0.16Weak
ulcerative colitisOpen Targets
0.16Weak
Griscelli diseaseOpen Targets
0.07Suggestive
Griscelli disease type 3Open Targets
0.06Suggestive
Griscelli syndrome type 3Open Targets
0.06Suggestive
uncombable hair syndromeOpen Targets
0.05Suggestive
oculocutaneous albinism type 3Open Targets
0.05Suggestive
Griscelli disease type 1Open Targets
0.04Suggestive
Griscelli syndrome type 1Open Targets
0.04Suggestive
Microcephaly - albinism - digital anomaliesOpen Targets
0.04Suggestive
microcephaly-albinism-digital anomalies syndromeOpen Targets
0.04Suggestive
Tietz syndromeOpen Targets
0.04Suggestive
Tietze syndromeOpen Targets
0.04Suggestive
ermine phenotypeOpen Targets
0.04Suggestive
isolated familial wooly hair disorderOpen Targets
0.04Suggestive
Woolly hairOpen Targets
0.04Suggestive
hypotrichosis 8Open Targets
0.04Suggestive
Waardenburg syndrome, IIa 2FOpen Targets
0.04Suggestive
Waardenburg syndrome type 4BOpen Targets
0.03Suggestive
Clouston syndromeOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TRNT1Protein interaction80%PRR7Protein interaction68%
Tissue Expression6 tissues
Ovary
100%
Heart
0%
Brain
0%
Liver
0%
Bone Marrow
0%
Lung
0%
Gene Interaction Network
Click a node to explore
PRR9TRNT1PRR7
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q5T870
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.94LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.56 [1.01–1.94]
RankingsWhere PRR9 stands among ~20K protein-coding genes
  • #19,393of 20,598
    Most Researched1
  • #17,540of 17,882
    Most Constrained (LOEUF)1.94
Genes detectedPRR9
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Genome-Wide Association Meta-Analysis Reveals Novel Juvenile Idiopathic Arthritis Susceptibility Loci.
PMID: 28719732
Arthritis Rheumatol · 2017
1.00
2
Gene duplications and gene loss in the epidermal differentiation complex during the evolutionary land-to-water transition of cetaceans.
PMID: 34112911
Sci Rep · 2021
0.90
3
Core circadian clock and light signaling genes brought into genetic linkage across the green lineage.
PMID: 35674369
Plant Physiol · 2022
0.80
4
FLRT3 and TGF-β/SMAD4 signalling: Impacts on apoptosis, autophagy and ion channels in supraventricular tachycardia.
PMID: 38509727
J Cell Mol Med · 2024
0.70
5
3,4-Dibromo-7-Azaindole Modulates Arabidopsis Circadian Clock by Inhibiting Casein Kinase 1 Activity.
PMID: 31529098
Plant Cell Physiol · 2019
0.60