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GeneE
25 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PSEN2
presenilin 2
Chromosome 1 Β· 1q42.13
NCBI Gene: 5664Ensembl: ENSG00000143801.19HGNC: HGNC:9509UniProt: P49810
260PubMed Papers
22Diseases
7Drugs
11Pathogenic Variants
FUNCTIONAL ROLE
Protease
RESEARCH IMPACT
Trending
CLINICAL
FDA Approved TargetOMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingaspartic endopeptidase activity, intramembrane cleavingamyloid-beta formationNotch receptor processing, ligand-dependentearly-onset autosomal dominant Alzheimer diseasedilated cardiomyopathy 1VDesmoid-type fibromatosisAlzheimer disease
✦AI Summary

PSEN2 encodes presenilin-2, the catalytic subunit of the gamma-secretase complex, a key protease responsible for intramembrane cleavage of integral membrane proteins including Notch receptors and amyloid-beta precursor protein (APP) 1. PSEN2 selectively cleaves substrates in late endosomal/lysosomal compartments, generating intracellular amyloid-beta with longer variants. Beyond its proteolytic function, PSEN2 holoprotein acts as a calcium-leak channel facilitating passive calcium movement from the endoplasmic reticulum to cytosol and regulates mitochondrion-ER membrane tethering, thereby modulating calcium shuttling between these organelles. PSEN2 mutations cause autosomal dominant early-onset Alzheimer disease (EOAD), with disease mechanisms centered on altered APP cleavage leading to increased amyloid-beta production 2. Among 304 Chinese EOAD patients, PSEN2 variants accounted for 2.0% of cases, with specific mutations (V214L, M239T) demonstrated to increase AΞ²42 levels and AΞ²42/AΞ²40 ratios 3. Cerebral organoids derived from PSEN2 mutation carriers (N141I) exhibit AD-specific pathological markers including altered tissue patterning and premature neuronal differentiation 4. CSF biomarkers in PSEN2 mutation carriers show consistent abnormalities in tau, phospho-tau, and AΞ²42 levels 2. PSEN2 variants also rarely contribute to dilated cardiomyopathy, indicating broader pathogenic significance beyond neurodegeneration.

Sources cited
1
Presenilin proteins are components of gamma-secretase and cause alterations in intramembranous cleavage of APP, leading to increased amyloid-beta production in familial Alzheimer disease
PMID: 11274343
2
PSEN2 mutations cause autosomal dominant early-onset Alzheimer disease; identified in familial and sporadic EOAD cases with abnormal CSF biomarkers
PMID: 28350801
3
PSEN2 variants account for 2.0% of Chinese EOAD cohort; specific mutations increase AΞ²42 levels and AΞ²42/AΞ²40 ratios
PMID: 40016812
4
Cerebral organoids from PSEN2(N141I) mutation carriers develop AD-specific markers with defective tissue patterning and altered development including premature neuronal differentiation
PMID: 37864790
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜22
early-onset autosomal dominant Alzheimer diseaseOpen Targets
0.80Strong
dilated cardiomyopathy 1VOpen Targets
0.50Moderate
Desmoid-type fibromatosisOpen Targets
0.48Moderate
Alzheimer diseaseOpen Targets
0.42Moderate
neoplasmOpen Targets
0.42Moderate
dementiaOpen Targets
0.37Weak
familial isolated dilated cardiomyopathyOpen Targets
0.37Weak
diabetes mellitusOpen Targets
0.32Weak
Huntington disease-like syndromeOpen Targets
0.27Weak
Parkinson diseaseOpen Targets
0.26Weak
complex regional pain syndromeOpen Targets
0.24Weak
ovarian neoplasmOpen Targets
0.21Weak
genetic disorderOpen Targets
0.19Weak
dilated cardiomyopathyOpen Targets
0.11Weak
vascular dementiaOpen Targets
0.11Weak
breast cancerOpen Targets
0.11Weak
multiple myelomaOpen Targets
0.11Weak
non-small cell lung carcinomaOpen Targets
0.10Suggestive
infectionOpen Targets
0.08Suggestive
melanomaOpen Targets
0.08Suggestive
Alzheimer disease 4UniProt
Cardiomyopathy, dilated, 1VUniProt
Pathogenic Variants11
NM_000447.3(PSEN2):c.422A>T (p.Asn141Ile)Pathogenic
Alzheimer disease 4|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 141
NM_000447.3(PSEN2):c.364A>C (p.Thr122Pro)Pathogenic
Alzheimer disease 4|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 122
NM_000447.3(PSEN2):c.524C>T (p.Ser175Phe)Pathogenic
Alzheimer disease 4
β˜…β˜†β˜†β˜†2025β†’ Residue 175
NM_000447.3(PSEN2):c.356+2T>CLikely pathogenic
Alzheimer disease 4
β˜…β˜†β˜†β˜†2025
NM_000447.3(PSEN2):c.715A>G (p.Met239Val)Pathogenic
Alzheimer disease 4|not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 239
NM_000447.3(PSEN2):c.342_343del (p.Lys115fs)Pathogenic
Alzheimer disease 4
β˜…β˜†β˜†β˜†2024β†’ Residue 115
NM_000447.3(PSEN2):c.886+2_886+4delLikely pathogenic
Alzheimer disease 4
β˜…β˜†β˜†β˜†2017
NC_000001.11:g.(?_226881888)_(226895599_?)delPathogenic
Alzheimer disease 4
β˜…β˜†β˜†β˜†2017
NM_000447.3(PSEN2):c.254C>T (p.Ala85Val)Pathogenic
Alzheimer disease 4|not provided
β˜†β˜†β˜†β˜†2008β†’ Residue 85
NM_000447.3(PSEN2):c.365C>G (p.Thr122Arg)Pathogenic
Alzheimer disease 4|not provided
β˜†β˜†β˜†β˜†2003β†’ Residue 122
NM_000447.3(PSEN2):c.717G>A (p.Met239Ile)Pathogenic
Alzheimer disease 4|not provided
β˜†β˜†β˜†β˜†2000β†’ Residue 239
View on ClinVar β†—
Drug Targets7
AVAGACESTATPhase II
Gamma-secretase inhibitor
Alzheimer disease
BEGACESTATPhase I
Gamma-secretase inhibitor
Alzheimer disease
NIROGACESTATApproved
Gamma-secretase inhibitor
NIROGACESTAT HYDROBROMIDEApproved
Gamma-secretase inhibitor
RG-4733Phase II
Gamma-secretase inhibitor
breast cancer
SEMAGACESTATPhase III
Gamma-secretase inhibitor
Parkinson disease
TARENFLURBILPhase III
Gamma-secretase modulator
Alzheimer disease
Related Genes
TREM2Protein interaction100%SORL1Protein interaction100%MAPTProtein interaction99%A2MProtein interaction98%KCNIP3Protein interaction98%APOEProtein interaction96%
Tissue Expression6 tissues
Heart
100%
Ovary
84%
Liver
74%
Lung
71%
Brain
40%
Bone Marrow
14%
Gene Interaction Network
Click a node to explore
PSEN2TREM2SORL1MAPTA2MKCNIP3APOE
PROTEIN STRUCTURE
Preparing viewer…
PDB7Y5X Β· 3.00 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.85LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.63 [0.48–0.85]
RankingsWhere PSEN2 stands among ~20K protein-coding genes
  • #1,465of 20,598
    Most Researched260 Β· top 10%
  • #542of 1,025
    FDA-Approved Drug Targets2
  • #2,729of 5,498
    Most Pathogenic Variants11
  • #7,370of 17,882
    Most Constrained (LOEUF)0.85
Genes detectedPSEN2
Sources retrieved25 papers
Response timeβ€”
πŸ“„ Sources
25β–Ό
1
Alzheimer's disease risk genes and mechanisms of disease pathogenesis.
PMID: 24951455
Biol Psychiatry Β· 2015
1.00
2
Alzheimer's disease: genes, proteins, and therapy.
PMID: 11274343
Physiol Rev Β· 2001
0.90
3
APP, PSEN1, and PSEN2 mutations in early-onset Alzheimer disease: A genetic screening study of familial and sporadic cases.
PMID: 28350801
PLoS Med Β· 2017
0.80
4
Cerebral organoids derived from patients with Alzheimer's disease with PSEN1/2 mutations have defective tissue patterning and altered development.
PMID: 37864790
Cell Rep Β· 2023
0.70
5
Regulatory region variability in the human presenilin-2 (PSEN2) gene: potential contribution to the gene activity and risk for AD.
PMID: 12232783
Mol Psychiatry Β· 2002
0.68