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25 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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PTPN13
protein tyrosine phosphatase non-receptor type 13
Chromosome 4 · 4q21.3
NCBI Gene: 5783Ensembl: ENSG00000163629.14HGNC: HGNC:9646UniProt: Q12923
192PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein tyrosine phosphatase activityprotein bindingphosphatidylinositol 3-kinase regulatory subunit bindingnegative regulation of protein phosphorylationAbnormality of the skeletal systemesophageal adenocarcinomapancreatic ductal adenocarcinomaMeningothelial Meningioma
✦AI Summary

PTPN13 encodes a non-receptor protein tyrosine phosphatase with dual roles in cancer, functioning both as an oncogene and tumor suppressor depending on cellular context 1. The protein negatively regulates FAS-induced apoptosis and NGFR-mediated pro-apoptotic signaling, while potentially modulating PI3K signaling through PIK3R2 dephosphorylation. PTPN13 participates in multiple signaling complexes, including regulation of ErbB2, Src, and EphrinB1 interactions that influence MAP kinase signaling in breast cancer 2. In colorectal cancer, PTPN13 loss leads to immune evasion through STAT1 dephosphorylation, independently of β-catenin signaling, inhibiting CD8+ T cell infiltration and MHC class I antigen presentation 3. Clinically, PTPN13 genetic polymorphisms show disease-specific associations: rs989902 variants increase risk for esophageal squamous cell carcinoma 4, head and neck squamous cell carcinoma 5, and colorectal cancer in Polish populations 6. In breast cancer, PTPN13 mutations correlate with shorter disease-free survival 7, while high expression associates with favorable prognosis. These findings highlight PTPN13's complex role in cancer biology and its potential as both a prognostic biomarker and therapeutic target.

Sources cited
1
PTPN13 has dual roles in cancer as both oncogene and tumor suppressor
PMID: 33322542
2
PTPN13 regulates ErbB2, Src, and EphrinB1 signaling complex affecting MAP kinase signaling
PMID: 22279592
3
PTPN13 loss causes immune evasion through STAT1 dephosphorylation and reduced CD8+ T cell infiltration
PMID: 41486293
4
rs989902 polymorphism increases esophageal squamous cell carcinoma risk
PMID: 38039548
5
PTPN13 polymorphisms increase head and neck squamous cell carcinoma risk
PMID: 19892796
6
rs989902 polymorphism increases colorectal cancer risk in Polish population
PMID: 28504867
7
PTPN13 mutations correlate with shorter disease-free survival in breast cancer
PMID: 36812232
Disease Associationsⓘ20
Abnormality of the skeletal systemOpen Targets
0.43Moderate
esophageal adenocarcinomaOpen Targets
0.37Weak
pancreatic ductal adenocarcinomaOpen Targets
0.37Weak
Angiomatous MeningiomaOpen Targets
0.37Weak
Atypical MeningiomaOpen Targets
0.37Weak
bile duct carcinomaOpen Targets
0.37Weak
breast ductal adenocarcinomaOpen Targets
0.37Weak
carcinoma of liver and intrahepatic biliary tractOpen Targets
0.37Weak
cutaneous melanomaOpen Targets
0.37Weak
Endometrial Endometrioid AdenocarcinomaOpen Targets
0.37Weak
gastric carcinomaOpen Targets
0.37Weak
hemangioblastomaOpen Targets
0.37Weak
Hepatobiliary NeoplasmOpen Targets
0.37Weak
HER2 Positive Breast CarcinomaOpen Targets
0.37Weak
kidney neoplasmOpen Targets
0.37Weak
lymphoid neoplasmOpen Targets
0.37Weak
Meningothelial MeningiomaOpen Targets
0.37Weak
Ovarian Endometrioid Adenocarcinoma with Squamous DifferentiationOpen Targets
0.37Weak
skin basal cell carcinomaOpen Targets
0.37Weak
Transitional MeningiomaOpen Targets
0.37Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PLEKHA1Protein interaction97%RAPGEF6Protein interaction96%APCProtein interaction93%ARHGAP29Protein interaction90%EFNB1Protein interaction87%EFNB2Protein interaction87%
Tissue Expression6 tissues
Ovary
100%
Heart
28%
Brain
26%
Lung
25%
Bone Marrow
6%
Liver
5%
Gene Interaction Network
Click a node to explore
PTPN13PLEKHA1RAPGEF6APCARHGAP29EFNB1EFNB2
PROTEIN STRUCTURE
Preparing viewer…
PDB3LNY · 1.30 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.74LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.64 [0.56–0.74]
RankingsWhere PTPN13 stands among ~20K protein-coding genes
  • #2,236of 20,598
    Most Researched192 · top quartile
  • #5,765of 17,882
    Most Constrained (LOEUF)0.74
Genes detectedPTPN13
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
Dual Role of the PTPN13 Tyrosine Phosphatase in Cancer.
PMID: 33322542
Biomolecules · 2020
1.00
2
PMID: 38039548
Ann Med · 2023
0.90
3
Targeting PTPN13 with 11-amino-acid peptides of C-terminal APC prevents immune evasion of colorectal cancer.
PMID: 41486293
Cell Res · 2026
0.80
4
PTPN13 induces cell junction stabilization and inhibits mammary tumor invasiveness.
PMID: 31938048
Theranostics · 2020
0.76
5
Missense polymorphisms of PTPRJ and PTPN13 genes affect susceptibility to a variety of human cancers.
PMID: 19672627
J Cancer Res Clin Oncol · 2010
0.72