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5 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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PTPN20
protein tyrosine phosphatase non-receptor type 20
Chromosome 10 · 10q11.22
NCBI Gene: 26095Ensembl: ENSG00000204179.11HGNC: HGNC:23423UniProt: Q4JDK3
12PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
centriolar satelliteprotein tyrosine phosphatase activitynucleoplasmcytoplasmprostate carcinomaCOVID-19Varicose veinssevere acute respiratory syndrome
✦AI Summary

PTPN20 (protein tyrosine phosphatase non-receptor type 20) is a non-transmembrane tyrosine phosphatase that functions as a regulator of actin polymerization and NF-κB signaling. The enzyme exhibits catalytic activity toward tyrosyl-phosphorylated substrates and is dynamically localized to sites of actin polymerization in response to extracellular stimuli including epidermal growth factor, osmotic stress, and integrin ligation 1. PTPN20 possesses a dynamic subcellular distribution, targeting the nucleus, microtubule network, and actin-rich membrane structures 1. In triple-negative breast cancer, PTPN20 promotes metastasis by activating NF-κB signaling through dephosphorylation of p65 at serine 468, preventing its binding to COMMD1 and protecting p65 from proteasomal degradation 2. Elevated PTPN20 expression correlates with enhanced cell migration, invasion, and lung metastasis in vivo 2. PTPN20 has also been identified as a significant prognostic marker in Helicobacter pylori-related gastric cancer, where it associates with immune cell infiltration and tumor mutational burden 3. These findings suggest PTPN20 represents a novel therapeutic target across multiple cancer types, with potential utility as a prognostic biomarker.

Sources cited
1
PTPN20 exhibits tyrosine phosphatase catalytic activity and is dynamically targeted to actin-rich structures in response to extracellular stimuli
PMID: 15790311
2
PTPN20 promotes TNBC metastasis by activating NF-κB through p65 dephosphorylation at Ser468
PMID: 39506852
3
PTPN20 is a prognostic marker in Helicobacter pylori-related gastric cancer associated with immune infiltration and tumor burden
PMID: 37359510
⚠Limited data available — This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
prostate carcinomaOpen Targets
0.24Weak
COVID-19Open Targets
0.19Weak
Varicose veinsOpen Targets
0.17Weak
severe acute respiratory syndromeOpen Targets
0.15Weak
Ventricular Outflow ObstructionOpen Targets
0.11Weak
gastric cancerOpen Targets
0.08Suggestive
lymphatic system diseaseOpen Targets
0.08Suggestive
vein disorderOpen Targets
0.08Suggestive
triple-negative breast cancerOpen Targets
0.07Suggestive
hereditary hyperferritinemia with congenital cataractsOpen Targets
0.05Suggestive
hydrocephalus, congenital communicating, 1Open Targets
0.05Suggestive
early-onset non-syndromic cataractOpen Targets
0.05Suggestive
HydrocephalusOpen Targets
0.05Suggestive
Cataract-microcornea syndromeOpen Targets
0.05Suggestive
Cataract with Y-shaped suture opacitiesOpen Targets
0.04Suggestive
Total congenital cataractOpen Targets
0.04Suggestive
megalencephaly, autosomal dominantOpen Targets
0.04Suggestive
Familial ocular anterior segment mesenchymal dysgenesisOpen Targets
0.04Suggestive
isolated ectopia lentisOpen Targets
0.04Suggestive
granular corneal dystrophy type IOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
FRMPD2Protein interaction95%
Tissue Expression6 tissues
Heart
100%
Ovary
19%
Brain
18%
Liver
4%
Lung
4%
Bone Marrow
2%
Gene Interaction Network
Click a node to explore
PTPN20FRMPD2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q4JDK3
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.70LoF Tolerant
pLIⓘ
0.37Tolerant
Observed/Expected LoF0.40 [0.24–0.70]
RankingsWhere PTPN20 stands among ~20K protein-coding genes
  • #16,547of 20,598
    Most Researched12
  • #5,313of 17,882
    Most Constrained (LOEUF)0.70
Genes detectedPTPN20
Sources retrieved5 papers
Response time—
📄 Sources
5
1
PTPN20 promotes metastasis through activating NF-κB signaling in triple-negative breast cancer.
PMID: 39506852
Breast Cancer Res · 2024
1.00
2
Identification of PTPN20 as an innate immunity-related gene in gastric cancer with Helicobacter pylori infection.
PMID: 37359510
Front Immunol · 2023
0.80
3
Protein tyrosine phosphatase hPTPN20a is targeted to sites of actin polymerization.
PMID: 15790311
Biochem J · 2005
0.60
4
Anti-TROVE2 Antibody Determined by Immune-Related Array May Serve as a Predictive Marker for Adalimumab Immunogenicity and Effectiveness in RA.
PMID: 33763493
J Immunol Res · 2021
0.40
5
A Self-Training Subspace Clustering Algorithm under Low-Rank Representation for Cancer Classification on Gene Expression Data.
PMID: 28600258
IEEE/ACM Trans Comput Biol Bioinform · 2018
0.20