HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PTPRU
protein tyrosine phosphatase receptor type U
Chromosome 1 · 1p35.3
NCBI Gene: 10076Ensembl: ENSG00000060656.21HGNC: HGNC:9683UniProt: Q92729
47PubMed Papers
20Diseases
0Drugs
2Pathogenic Variants
FUNCTIONAL ROLE
Receptor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
positive regulation of cell-cell adhesion mediated by cadherincell-cell junctionprotein bindingbeta-catenin bindingShort staturePhenotypic abnormalitymalunion fracturenervous system benign neoplasm
✦AI Summary

PTPRU (protein tyrosine phosphatase receptor type U) is a receptor-linked protein tyrosine phosphatase that regulates cell adhesion, proliferation, and differentiation through dephosphorylation of β-catenin 12. However, PTPRU is structurally unique among RPTPs as a redox-sensitive pseudophosphatase with two inactive phosphatase domains; despite lacking catalytic activity, it functions by competing with active phosphatases for substrate binding 3. PTPRU exhibits context-dependent roles: it negatively regulates osteogenic differentiation in quiescent mesenchymal stem cells while maintaining stemness 4, and is involved in neural development where miR-34c-5p targets its 3'UTR 5. In cancer, PTPRU shows paradoxical functions—while traditionally characterized as tumor-suppressive, nuclear-localized PTPRU isoforms promote gastric cancer and glioma progression through β-catenin and focal adhesion signaling 12. PTPRU alterations appear in prostatic basal cell carcinoma 6 and may modulate semaglutide's weight loss effects 7. These findings indicate PTPRU functions as a multi-isoform protein with tissue- and context-specific roles in development, homeostasis, and disease progression, potentially serving as a therapeutic target depending on disease context.

Sources cited
1
PTPRU suppresses osteogenic differentiation during quiescence in mesenchymal stem cells and positively regulates β-catenin-TCF signaling
PMID: 36332481
2
miR-34c-5p directly binds PTPRU's 3'UTR; PTPRU is involved in neural development
PMID: 35011720
3
PTPRU nuclear isoform is required for gastric cancer progression through β-catenin signaling and focal adhesion protein regulation
PMID: 25337216
4
PTPRU promotes glioma growth and motility through β-catenin phosphorylation and focal adhesion signaling
PMID: 24876153
5
PTPRU is a pseudophosphatase lacking catalytic activity but functions by substrate competition; contains redox-sensitive cysteines
PMID: 32591542
6
PTPRU alterations identified as putative driver mutations in prostatic basal cell carcinoma
PMID: 36309102
7
PTPRU identified as a modulator of semaglutide's effects on weight loss with ancestry-dependent variability
PMID: 40585105
Disease Associationsⓘ20
Short statureOpen Targets
0.34Weak
Phenotypic abnormalityOpen Targets
0.17Weak
malunion fractureOpen Targets
0.15Weak
nervous system benign neoplasmOpen Targets
0.14Weak
lung cancerOpen Targets
0.13Weak
HematemesisOpen Targets
0.13Weak
ovarian dysfunctionOpen Targets
0.13Weak
ulcerative colitisOpen Targets
0.12Weak
Abruptio PlacentaeOpen Targets
0.12Weak
chronic venous hypertensionOpen Targets
0.12Weak
ShockOpen Targets
0.12Weak
head injuryOpen Targets
0.12Weak
postinflammatory pulmonary fibrosisOpen Targets
0.12Weak
neoplasmOpen Targets
0.11Weak
adolescent idiopathic scoliosisOpen Targets
0.11Weak
ankylosing spondylitisOpen Targets
0.10Weak
cancerOpen Targets
0.10Weak
Abnormal urine outputOpen Targets
0.10Suggestive
central nervous system cancerOpen Targets
0.09Suggestive
gliomaOpen Targets
0.08Suggestive
Pathogenic Variants2
NM_133178.4(PTPRU):c.2531C>T (p.Pro844Leu)Likely pathogenic
Short stature
☆☆☆☆2001→ Residue 844
NM_133178.4(PTPRU):c.4165A>C (p.Met1389Leu)Likely pathogenic
Short stature
☆☆☆☆2001→ Residue 1389
View on ClinVar ↗
Related Genes
CTNNB1Protein interaction100%KITProtein interaction93%PTSProtein interaction84%DVL1Protein interaction79%MEP1BProtein interaction77%CDH17Protein interaction71%
Tissue Expression6 tissues
Ovary
100%
Liver
62%
Lung
57%
Heart
37%
Brain
28%
Bone Marrow
3%
Gene Interaction Network
Click a node to explore
PTPRUCTNNB1KITPTSDVL1MEP1BCDH17
PROTEIN STRUCTURE
Preparing viewer…
PDB6SUB · 1.72 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.53Moderately Constrained
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.43 [0.35–0.53]
RankingsWhere PTPRU stands among ~20K protein-coding genes
  • #9,261of 20,598
    Most Researched47
  • #4,450of 5,498
    Most Pathogenic Variants2
  • #3,269of 17,882
    Most Constrained (LOEUF)0.53 · top quartile
Genes detectedPTPRU
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
PTPRU, a quiescence-induced receptor tyrosine phosphatase negatively regulates osteogenic differentiation of human mesenchymal stem cells.
PMID: 36332481
Biochem Biophys Res Commun · 2022
1.00
2
Altered White Matter and microRNA Expression in a Murine Model Related to Williams Syndrome Suggests That miR-34b/c Affects Brain Development via
PMID: 35011720
Cells · 2022
0.90
3
Knockdown of protein tyrosine phosphatase receptor U inhibits growth and motility of gastric cancer cells.
PMID: 25337216
Int J Clin Exp Pathol · 2014
0.80
4
Protein tyrosine phosphatase receptor U (PTPRU) is required for glioma growth and motility.
PMID: 24876153
Carcinogenesis · 2014
0.70
5
The receptor PTPRU is a redox sensitive pseudophosphatase.
PMID: 32591542
Nat Commun · 2020
0.60