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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PUS1
pseudouridine synthase 1
Chromosome 12 Β· 12q24.33
NCBI Gene: 80324Ensembl: ENSG00000177192.15HGNC: HGNC:15508UniProt: E5KMT5
73PubMed Papers
21Diseases
0Drugs
78Pathogenic Variants
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
mRNA pseudouridine synthesisnucleusnucleoplasmpseudouridine synthase activityMitochondrial myopathy and sideroblastic anemiamyopathy, lactic acidosis, and sideroblastic anemiamitochondrial diseaseIntellectual disability
✦AI Summary

PUS1 (pseudouridine synthase 1) is an RNA-modifying enzyme that catalyzes the formation of pseudouridine in both tRNAs and mRNAs. In mitochondria, PUS1 modifies specific positions in tRNAs (27/28 in the anticodon stem and positions 34 and 36 in intron-containing tRNAs), where its activity is essential for maintaining mitochondrial tRNA levels and supporting proper mitochondrial protein synthesis 1. PUS1 also pseudouridylates mRNAs at consensus sequences (5'-UGUAG-3') and regulates pre-mRNA splicing by modifying sites near alternatively spliced regions and splice sites 2. The enzyme functions co-transcriptionally, directly affecting splicing efficiency and mRNA 3'-end processing 2. PUS1 deficiency causes mitochondrial myopathy, lactic acidosis, and sideroblastic anemia 1 (MLASA), characterized by impaired erythropoiesis due to compromised mitochondrial function and protein synthesis 1. In cancer contexts, PUS1 acts as an oncogene, promoting tumor progression in hepatocellular carcinoma by enhancing translation of oncogenic mRNAs through pseudouridylation 3, and facilitating metastasis in prostate cancer through non-enzymatic stabilization of EIF3b protein 4. Clinically, PUS1 serves as a prognostic biomarker and potential therapeutic target in multiple cancer types 35.

Sources cited
1
PUS1 modifies mitochondrial tRNA positions 27/28 and is essential for erythropoiesis and mitochondrial function in MLASA
PMID: 38635773
2
PUS1 pseudouridylates mRNAs at 5'-UGUAG-3' consensus sequences and regulates pre-mRNA splicing co-transcriptionally
PMID: 35051350
3
PUS1 promotes hepatocellular carcinoma by enhancing translation of oncogenic mRNAs through pseudouridylation
PMID: 38015993
4
PUS1 facilitates prostate cancer metastasis through non-enzymatic stabilization of EIF3b protein
PMID: 39247811
5
PUS1 serves as a prognostic biomarker and promotes cell migration in clear cell renal cell carcinoma
PMID: 39993614
Disease Associationsβ“˜21
Mitochondrial myopathy and sideroblastic anemiaOpen Targets
0.82Strong
myopathy, lactic acidosis, and sideroblastic anemiaOpen Targets
0.64Moderate
mitochondrial diseaseOpen Targets
0.40Weak
Intellectual disabilityOpen Targets
0.37Weak
genetic disorderOpen Targets
0.19Weak
hepatocellular carcinomaOpen Targets
0.10Suggestive
neoplasmOpen Targets
0.10Suggestive
breast cancerOpen Targets
0.08Suggestive
renal cell carcinomaOpen Targets
0.08Suggestive
prostate cancerOpen Targets
0.07Suggestive
non-small cell lung carcinomaOpen Targets
0.07Suggestive
autosomal dominant mitochondrial myopathy with exercise intoleranceOpen Targets
0.06Suggestive
Distal myopathy, Nonaka typeOpen Targets
0.05Suggestive
Mitochondrial myopathyOpen Targets
0.05Suggestive
myopathy, distal, 5Open Targets
0.04Suggestive
combined oxidative phosphorylation deficiency 49Open Targets
0.04Suggestive
Griscelli diseaseOpen Targets
0.04Suggestive
GNE myopathyOpen Targets
0.04Suggestive
exercise intolerance, riboflavin-responsiveOpen Targets
0.04Suggestive
autosomal recessive limb-girdle muscular dystrophy type 2LOpen Targets
0.04Suggestive
Myopathy with lactic acidosis and sideroblastic anemia 1UniProt
Pathogenic Variants78
NM_025215.6(PUS1):c.930del (p.Glu311fs)Pathogenic
not provided|Sulfite oxidase deficiency due to molybdenum cofactor deficiency type B1
β˜…β˜…β˜†β˜†2025β†’ Residue 311
NM_025215.6(PUS1):c.460C>T (p.Gln154Ter)Pathogenic
not provided|Myopathy, lactic acidosis, and sideroblastic anemia 1|Myopathy, lactic acidosis, and sideroblastic anemia
β˜…β˜…β˜†β˜†2025β†’ Residue 154
NM_025215.6(PUS1):c.70_74dup (p.Ser26fs)Pathogenic
Myopathy, lactic acidosis, and sideroblastic anemia 1|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 26
NM_025215.6(PUS1):c.430C>T (p.Arg144Trp)Pathogenic
Myopathy, lactic acidosis, and sideroblastic anemia 1|not provided|Myopathy, lactic acidosis, and sideroblastic anemia
β˜…β˜…β˜†β˜†2025β†’ Residue 144
NM_025215.6(PUS1):c.301C>T (p.Gln101Ter)Pathogenic
not provided|Myopathy, lactic acidosis, and sideroblastic anemia
β˜…β˜…β˜†β˜†2025β†’ Residue 101
NM_025215.6(PUS1):c.107_122del (p.Pro36fs)Pathogenic
not provided|Myopathy, lactic acidosis, and sideroblastic anemia 1
β˜…β˜…β˜†β˜†2025β†’ Residue 36
NM_025215.6(PUS1):c.454dup (p.Ala152fs)Pathogenic
not provided|Myopathy, lactic acidosis, and sideroblastic anemia|Myopathy, lactic acidosis, and sideroblastic anemia 1
β˜…β˜…β˜†β˜†2024β†’ Residue 152
NM_025215.6(PUS1):c.505_506del (p.Lys169fs)Pathogenic
not provided|Myopathy, lactic acidosis, and sideroblastic anemia
β˜…β˜…β˜†β˜†2024β†’ Residue 169
NM_025215.6(PUS1):c.837_838del (p.Ala280fs)Pathogenic
not provided|Myopathy, lactic acidosis, and sideroblastic anemia
β˜…β˜…β˜†β˜†2024β†’ Residue 280
NM_025215.6(PUS1):c.482G>A (p.Trp161Ter)Pathogenic
not provided|Myopathy, lactic acidosis, and sideroblastic anemia 1
β˜…β˜…β˜†β˜†2023β†’ Residue 161
NM_025215.6(PUS1):c.418C>T (p.Gln140Ter)Pathogenic
not provided|Myopathy, lactic acidosis, and sideroblastic anemia 1
β˜…β˜…β˜†β˜†2023β†’ Residue 140
NM_025215.6(PUS1):c.45G>A (p.Trp15Ter)Pathogenic
not provided|Myopathy, lactic acidosis, and sideroblastic anemia 1|PUS1-related disorder
β˜…β˜…β˜†β˜†2023β†’ Residue 15
NM_025215.6(PUS1):c.813del (p.Phe272fs)Pathogenic
Myopathy, lactic acidosis, and sideroblastic anemia 1
β˜…β˜…β˜†β˜†2023β†’ Residue 272
NM_025215.6(PUS1):c.916A>T (p.Lys306Ter)Pathogenic
not provided|Myopathy, lactic acidosis, and sideroblastic anemia 1
β˜…β˜…β˜†β˜†2022β†’ Residue 306
NM_025215.6(PUS1):c.717C>A (p.Tyr239Ter)Likely pathogenic
Myopathy, lactic acidosis, and sideroblastic anemia 1
β˜…β˜…β˜†β˜†2022β†’ Residue 239
NM_025215.6(PUS1):c.1033C>T (p.Gln345Ter)Likely pathogenic
Myopathy, lactic acidosis, and sideroblastic anemia
β˜…β˜†β˜†β˜†2025β†’ Residue 345
NM_025215.6(PUS1):c.431G>A (p.Arg144Gln)Likely pathogenic
Myopathy, lactic acidosis, and sideroblastic anemia
β˜…β˜†β˜†β˜†2025β†’ Residue 144
NM_025215.6(PUS1):c.139_142delinsGG (p.Arg47fs)Likely pathogenic
Myopathy, lactic acidosis, and sideroblastic anemia
β˜…β˜†β˜†β˜†2025β†’ Residue 47
NM_025215.6(PUS1):c.436_439del (p.Asp146fs)Likely pathogenic
Myopathy, lactic acidosis, and sideroblastic anemia
β˜…β˜†β˜†β˜†2025β†’ Residue 146
NM_025215.6(PUS1):c.291_295del (p.Tyr97_Gly99delinsTer)Likely pathogenic
Myopathy, lactic acidosis, and sideroblastic anemia
β˜…β˜†β˜†β˜†2025β†’ Residue 97
View on ClinVar β†—
Related Genes
PUSL1Shared pathway100%TRMT61AProtein interaction100%MRPL17Protein interaction94%GTPBP3Protein interaction90%WDR12Protein interaction85%TIMM10Protein interaction84%
Tissue Expression6 tissues
Liver
100%
Bone Marrow
69%
Lung
45%
Ovary
42%
Heart
26%
Brain
16%
Gene Interaction Network
Click a node to explore
PUS1PUSL1TRMT61AMRPL17GTPBP3WDR12TIMM10
PROTEIN STRUCTURE
Preparing viewer…
PDB4J37 Β· 1.75 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.16LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.83 [0.60–1.16]
RankingsWhere PUS1 stands among ~20K protein-coding genes
  • #6,501of 20,598
    Most Researched73
  • #952of 5,498
    Most Pathogenic Variants78 Β· top quartile
  • #12,130of 17,882
    Most Constrained (LOEUF)1.16
Genes detectedPUS1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Mitochondrial tRNA pseudouridylation governs erythropoiesis.
PMID: 38635773
Blood Β· 2024
1.00
2
Quantitative profiling of pseudouridylation landscape in the human transcriptome.
PMID: 36997645
Nat Chem Biol Β· 2023
0.90
3
Pseudouridine synthases modify human pre-mRNA co-transcriptionally and affect pre-mRNA processing.
PMID: 35051350
Mol Cell Β· 2022
0.80
4
A 20-year Clinical and Genetic Neuromuscular Cohort Analysis in Lebanon: An International Effort.
PMID: 34602496
J Neuromuscul Dis Β· 2022
0.70
5
Identification and validation of key biomarkers based on RNA methylation genes in sepsis.
PMID: 37701433
Front Immunol Β· 2023
0.60