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GeneE
25 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PYCR1
pyrroline-5-carboxylate reductase 1
Chromosome 17 Β· 17q25.3
NCBI Gene: 5831Ensembl: ENSG00000183010.17HGNC: HGNC:9721UniProt: E2QRB3
163PubMed Papers
22Diseases
0Drugs
46Pathogenic Variants
RESEARCH IMPACT
Trending
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
pyrroline-5-carboxylate reductase activityprotein bindingidentical protein bindingcellular response to oxidative stressautosomal recessive cutis laxa type 2BPYCR1-related de Barsy syndromecutis laxagenetic disorder
✦AI Summary

PYCR1 (pyrroline-5-carboxylate reductase 1) is a mitochondrial oxidoreductase that catalyzes the final step in proline biosynthesis by reducing pyrroline-5-carboxylate to L-proline using NAD(P)H as cofactor 1234. The enzyme shows higher specific activity with NADH at physiologic concentrations 13. Beyond its metabolic role, PYCR1 functions in cellular stress responses and has gained prominence in cancer biology. In cancer-associated fibroblasts (CAFs), PYCR1-mediated proline synthesis supports collagen production and pro-tumorigenic extracellular matrix deposition 5. The enzyme promotes tumor progression through multiple mechanisms, including regulation of glycolysis and enhancement of cell proliferation and metastasis in hepatocellular carcinoma via IRS1 expression modulation through histone lactylation 6. PYCR1 also exhibits non-enzymatic nuclear functions, where IGF1R-mediated phosphorylation enables its interaction with transcription factor ELK4 to regulate gene expression under hypoxic conditions 7. Additionally, PYCR1 contributes to mitochondrial homeostasis and cellular senescence reversal, with proline supplementation activating mitophagy pathways and restoring mitochondrial function in aging cells 8. Mutations in PYCR1 are associated with autosomal recessive cutis laxa disorders, highlighting its clinical significance in connective tissue biology.

Sources cited
1
In cancer-associated fibroblasts (CAFs), PYCR1-mediated proline synthesis supports collagen production and pro-tumorigenic extracellular matrix deposition .
PMID: 35760868
2
The enzyme promotes tumor progression through multiple mechanisms, including regulation of glycolysis and enhancement of cell proliferation and metastasis in hepatocellular carcinoma via IRS1 expression modulation through histone lactylation .
PMID: 39422696
3
PYCR1 also exhibits non-enzymatic nuclear functions, where IGF1R-mediated phosphorylation enables its interaction with transcription factor ELK4 to regulate gene expression under hypoxic conditions .
PMID: 37777542
4
Additionally, PYCR1 contributes to mitochondrial homeostasis and cellular senescence reversal, with proline supplementation activating mitophagy pathways and restoring mitochondrial function in aging cells .
PMID: 38354087
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜22
autosomal recessive cutis laxa type 2BOpen Targets
0.83Strong
PYCR1-related de Barsy syndromeOpen Targets
0.78Strong
cutis laxaOpen Targets
0.64Moderate
genetic disorderOpen Targets
0.52Moderate
geroderma osteodysplasticaOpen Targets
0.37Weak
Intellectual disabilityOpen Targets
0.37Weak
Abnormality of connective tissueOpen Targets
0.34Weak
neurodegenerative diseaseOpen Targets
0.27Weak
neoplasmOpen Targets
0.11Weak
microcephalyOpen Targets
0.11Weak
hepatocellular carcinomaOpen Targets
0.11Weak
lung adenocarcinomaOpen Targets
0.11Weak
lung cancerOpen Targets
0.11Weak
breast cancerOpen Targets
0.11Weak
non-small cell lung carcinomaOpen Targets
0.10Weak
cancerOpen Targets
0.10Weak
gastric cancerOpen Targets
0.09Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.09Suggestive
esophageal squamous cell carcinomaOpen Targets
0.08Suggestive
Miyoshi myopathyOpen Targets
0.08Suggestive
Cutis laxa, autosomal recessive, 2BUniProt
Cutis laxa, autosomal recessive, 3BUniProt
Pathogenic Variants46
NM_006907.4(PYCR1):c.535G>A (p.Ala179Thr)Pathogenic
not provided|Autosomal recessive cutis laxa type 2B|Wiedemann-Rautenstrauch-like progeroid syndrome|Cutis laxa|PYCR1-related de Barsy syndrome;Autosomal recessive cutis laxa type 2B
β˜…β˜…β˜†β˜†2026β†’ Residue 179
NM_006907.4(PYCR1):c.575del (p.Gly192fs)Pathogenic
Cutis laxa|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 192
NM_006907.4(PYCR1):c.633+1G>CPathogenic
Cutis laxa|Inborn genetic diseases|Wiedemann-Rautenstrauch-like progeroid syndrome|not provided|Autosomal recessive cutis laxa type 2B;PYCR1-related de Barsy syndrome|PYCR1-related disorder
β˜…β˜…β˜†β˜†2026
NM_006907.4(PYCR1):c.355C>T (p.Arg119Cys)Pathogenic
Autosomal recessive cutis laxa type 2B|not provided|Cutis laxa|PYCR1-related disorder|PYCR1-related de Barsy syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 119
NM_006907.4(PYCR1):c.797G>A (p.Arg266Gln)Pathogenic
Autosomal recessive cutis laxa type 2B|not provided|Inborn genetic diseases|Cutis laxa|PYCR1-related de Barsy syndrome|Uterine corpus endometrial carcinoma|Lung cancer
β˜…β˜…β˜†β˜†2026β†’ Residue 266
NM_006907.4(PYCR1):c.752G>A (p.Arg251His)Pathogenic
PYCR1-related de Barsy syndrome|not provided|Inborn genetic diseases|Cutis laxa
β˜…β˜…β˜†β˜†2025β†’ Residue 251
NM_006907.4(PYCR1):c.540+1G>APathogenic
Autosomal recessive cutis laxa type 2B|Wiedemann-Rautenstrauch-like progeroid syndrome|not provided|PYCR1-related de Barsy syndrome|Cervical cancer
β˜…β˜…β˜†β˜†2025
NM_006907.4(PYCR1):c.356G>A (p.Arg119His)Pathogenic
Autosomal recessive cutis laxa type 2B|PYCR1-related de Barsy syndrome|Wiedemann-Rautenstrauch-like progeroid syndrome|not provided|PYCR1-related disorder|Cutis laxa
β˜…β˜…β˜†β˜†2025β†’ Residue 119
NM_006907.4(PYCR1):c.355C>G (p.Arg119Gly)Pathogenic
Autosomal recessive cutis laxa type 2B|Cutis laxa|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 119
NM_006907.4(PYCR1):c.797+2_797+5delPathogenic
Autosomal recessive cutis laxa type 2B|PYCR1-related de Barsy syndrome;Autosomal recessive cutis laxa type 2B|not provided
β˜…β˜…β˜†β˜†2025
NM_006907.4(PYCR1):c.138+1G>APathogenic
Inborn genetic diseases|Cutis laxa|PYCR1-related de Barsy syndrome
β˜…β˜…β˜†β˜†2024
NM_006907.4(PYCR1):c.151A>T (p.Lys51Ter)Pathogenic
Cutis laxa|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 51
NM_006907.4(PYCR1):c.616G>A (p.Gly206Arg)Pathogenic
not provided|Cutis laxa|Autosomal recessive cutis laxa type 2B;PYCR1-related de Barsy syndrome|Abnormality of connective tissue|Autosomal recessive cutis laxa type 2B
β˜…β˜…β˜†β˜†2024β†’ Residue 206
NM_006907.4(PYCR1):c.386_387insCGCA (p.Glu130fs)Likely pathogenic
PYCR1-related de Barsy syndrome|Autosomal recessive cutis laxa type 2B;PYCR1-related de Barsy syndrome
β˜…β˜…β˜†β˜†2024β†’ Residue 130
NM_006907.4(PYCR1):c.67+2T>APathogenic
Autosomal recessive cutis laxa type 2B|PYCR1- related autosomal recessive cutis laxa
β˜…β˜…β˜†β˜†
NM_006907.4(PYCR1):c.176_194del (p.Thr59fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 59
NM_006907.4(PYCR1):c.118del (p.Ala40fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 40
NM_006907.4(PYCR1):c.509_513del (p.Val170fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 170
NM_006907.4(PYCR1):c.663_670dup (p.Pro224fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 224
NM_006907.4(PYCR1):c.59dup (p.Ala21fs)Pathogenic
Autosomal recessive cutis laxa type 2B|not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 21
View on ClinVar β†—
Related Genes
P4HA1Protein interaction98%PRODHProtein interaction98%ALDH4A1Protein interaction97%POLR2AProtein interaction95%PRODH2Protein interaction92%P4HA2Protein interaction92%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
95%
Lung
48%
Heart
48%
Liver
36%
Ovary
27%
Gene Interaction Network
Click a node to explore
PYCR1P4HA1PRODHALDH4A1POLR2APRODH2P4HA2
PROTEIN STRUCTURE
Preparing viewer…
PDB8TD7 Β· 1.61 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.27LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.86 [0.60–1.27]
RankingsWhere PYCR1 stands among ~20K protein-coding genes
  • #2,763of 20,598
    Most Researched163 Β· top quartile
  • #1,400of 5,498
    Most Pathogenic Variants46
  • #13,382of 17,882
    Most Constrained (LOEUF)1.27
Genes detectedPYCR1
Sources retrieved25 papers
Response timeβ€”
πŸ“„ Sources
25β–Ό
1
PYCR1 promotes liver cancer cell growth and metastasis by regulating IRS1 expression through lactylation modification.
PMID: 39422696
Clin Transl Med Β· 2024
1.00
2
2-APQC, a small-molecule activator of Sirtuin-3 (SIRT3), alleviates myocardial hypertrophy and fibrosis by regulating mitochondrial homeostasis.
PMID: 38744811
Signal Transduct Target Ther Β· 2024
0.90
3
IGF1R-phosphorylated PYCR1 facilitates ELK4 transcriptional activity and sustains tumor growth under hypoxia.
PMID: 37777542
Nat Commun Β· 2023
0.80
4
TSPAN8
PMID: 38569015
Sci Transl Med Β· 2024
0.70
5
Tanshinone IIA alleviates pulmonary fibrosis by modulating glutamine metabolic reprogramming based on [U-
PMID: 38697470
J Adv Res Β· 2025
0.60