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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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PYCR2
pyrroline-5-carboxylate reductase 2
Chromosome 1 Β· 1q42.12
NCBI Gene: 29920Ensembl: ENSG00000143811.20HGNC: HGNC:30262UniProt: A0A087WTV6
114PubMed Papers
21Diseases
0Drugs
32Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
mitochondrioncellular response to oxidative stressL-proline biosynthetic processpyrroline-5-carboxylate reductase activityhypomyelinating leukodystrophy 10Hypomyelinating leukodystrophy with or without oligondontia and/or hypogonadismleukodystrophyIntellectual disability
✦AI Summary

PYCR2 (pyrroline-5-carboxylate reductase 2) is an oxidoreductase that catalyzes the final step of proline biosynthesis by reducing pyrroline-5-carboxylate to L-proline using NAD(P)H, with higher specific activity in the presence of NADH 1. Beyond proline synthesis, PYCR2 participates in cellular responses to oxidative stress 2 and collaborates with RRM2B to protect cells from oxidative damage 3. In some cell types like erythrocytes, it may primarily generate NADP+ 4. PYCR2 plays significant roles in cancer metabolism and progression. It is overexpressed in hepatocellular carcinoma, colorectal cancer, and breast cancer, where it promotes tumorigenesis through multiple mechanisms. In HCC, PYCR2 activates the AKT signaling pathway to enhance glycolysis and cell viability 5. In colorectal cancer, it promotes progression via PI3K/AKT/mTOR pathway activation 6 and Wnt/Ξ²-catenin signaling through MASTL regulation 7. In breast cancer, c-Myc transcriptionally upregulates PYCR2 to promote invasion and metastasis via AKT activation 8. Clinically, PYCR2 deficiency causes hypomyelinating leukodystrophy 10 9, though proline auxotrophy may not be the primary disease mechanism. Recent evidence suggests proline supplementation can restore mitochondrial function and reverse aging hallmarks in senescent cells 10, indicating therapeutic potential beyond cancer contexts.

Sources cited
1
PYCR2 catalyzes reduction of pyrroline-5-carboxylate to L-proline using NAD(P)H with higher activity with NADH
PMID: 23024808
2
PYCR2 is involved in cellular response to oxidative stress
PMID: 25865492
3
PYCR2 may have primary function of NADP+ generation in some cell types like erythrocytes
PMID: 2722838
4
PYCR1 and PYCR2 collaborate with RRM2B to protect cells from oxidative stress
PMID: 26733354
5
PYCR2 promotes HCC cell viability and glycolysis through AKT signaling pathway activation
PMID: 37708598
6
PYCR2 is highly expressed in colorectal cancer and promotes progression via PI3K/AKT/mTOR pathway
PMID: 34512817
7
PYCR2 promotes colorectal cancer through MASTL/Wnt/Ξ²-catenin signaling and cancer stem cell regulation
PMID: 37508547
8
c-Myc transcriptionally induces PYCR2 to promote breast cancer invasion and metastasis via AKT pathway
PMID: 38101533
9
PYCR2 deficiency causes hypomyelinating leukodystrophy 10; metabolomic changes suggest impaired purine/pyrimidine metabolism rather than proline auxotrophy as primary mechanism
PMID: 38709052
10
PYCR2 expression restoration by NANOG enhances proline biosynthesis to restore mitochondrial function and reverse aging hallmarks in senescent cells
PMID: 38354087
Disease Associationsβ“˜21
hypomyelinating leukodystrophy 10Open Targets
0.79Strong
Hypomyelinating leukodystrophy with or without oligondontia and/or hypogonadismOpen Targets
0.68Moderate
leukodystrophyOpen Targets
0.41Moderate
Intellectual disabilityOpen Targets
0.37Weak
autosomal recessive primary microcephalyOpen Targets
0.37Weak
genetic disorderOpen Targets
0.34Weak
metachromatic leukodystrophyOpen Targets
0.27Weak
neurodegenerative diseaseOpen Targets
0.26Weak
microcephalyOpen Targets
0.12Weak
colorectal carcinomaOpen Targets
0.11Weak
neoplasmOpen Targets
0.09Suggestive
glioblastoma multiformeOpen Targets
0.08Suggestive
colon carcinomaOpen Targets
0.05Suggestive
cancerOpen Targets
0.04Suggestive
hemoglobin D diseaseOpen Targets
0.04Suggestive
hepatocellular carcinomaOpen Targets
0.04Suggestive
renal carcinomaOpen Targets
0.03Suggestive
breast cancerOpen Targets
0.03Suggestive
childhood-onset motor and cognitive regression syndrome with extrapyramidal movement disorderOpen Targets
0.03Suggestive
hemoglobin E diseaseOpen Targets
0.03Suggestive
Leukodystrophy, hypomyelinating, 10UniProt
Pathogenic Variants32
NM_013328.4(PYCR2):c.252del (p.Asp85fs)Pathogenic
not provided|Hypomyelinating leukodystrophy 10
β˜…β˜…β˜†β˜†2025β†’ Residue 85
NM_013328.4(PYCR2):c.309del (p.Val104fs)Pathogenic
not provided|Hypomyelinating leukodystrophy 10
β˜…β˜…β˜†β˜†2025β†’ Residue 104
NM_013328.4(PYCR2):c.355C>T (p.Arg119Cys)Likely pathogenic
Hypomyelinating leukodystrophy 10|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 119
NM_013328.4(PYCR2):c.796C>T (p.Arg266Ter)Pathogenic
Hypomyelinating leukodystrophy 10|not provided|Leukodystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 266
NM_013328.4(PYCR2):c.676C>T (p.Gln226Ter)Pathogenic
Hypomyelinating leukodystrophy 10|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 226
NM_013328.4(PYCR2):c.757_758dup (p.Leu254fs)Pathogenic
not provided|Hypomyelinating leukodystrophy 10
β˜…β˜…β˜†β˜†2023β†’ Residue 254
NM_013328.4(PYCR2):c.356G>A (p.Arg119His)Likely pathogenic
not provided|Hypomyelinating leukodystrophy 10
β˜…β˜…β˜†β˜†2023β†’ Residue 119
NM_013328.4(PYCR2):c.541G>T (p.Ala181Ser)Likely pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2025β†’ Residue 181
NM_013328.4(PYCR2):c.790C>T (p.Arg264Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 264
NM_013328.4(PYCR2):c.28C>T (p.Gln10Ter)Likely pathogenic
Leukodystrophy
β˜…β˜†β˜†β˜†2024β†’ Residue 10
NM_013328.4(PYCR2):c.529G>A (p.Gly177Arg)Likely pathogenic
Hypomyelinating leukodystrophy 10
β˜…β˜†β˜†β˜†2024β†’ Residue 177
NM_013328.4(PYCR2):c.773T>C (p.Val258Ala)Likely pathogenic
Hypomyelinating leukodystrophy 10
β˜…β˜†β˜†β˜†2024β†’ Residue 258
NM_013328.4(PYCR2):c.439C>T (p.Gln147Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 147
NM_013328.4(PYCR2):c.138+1G>TLikely pathogenic
not provided|Hypomyelinating leukodystrophy 10
β˜…β˜†β˜†β˜†2024
NM_013328.4(PYCR2):c.577G>A (p.Val193Met)Likely pathogenic
Hypomyelinating leukodystrophy 10
β˜…β˜†β˜†β˜†2023β†’ Residue 193
NM_013328.4(PYCR2):c.746dup (p.Phe250fs)Pathogenic
Hypomyelinating leukodystrophy 10
β˜…β˜†β˜†β˜†2023β†’ Residue 250
NM_013328.4(PYCR2):c.334C>T (p.Gln112Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 112
NM_013328.4(PYCR2):c.633+1G>ALikely pathogenic
Hypomyelinating leukodystrophy 10
β˜…β˜†β˜†β˜†2023
NM_013328.4(PYCR2):c.67+2C>TPathogenic
Hypomyelinating leukodystrophy 10
β˜…β˜†β˜†β˜†2023
NM_013328.4(PYCR2):c.618_619del (p.Ala207fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 207
View on ClinVar β†—
Related Genes
P4HA1Protein interaction98%PRODHProtein interaction98%ALDH4A1Protein interaction98%P4HA2Protein interaction98%PRODH2Protein interaction92%LAP3Protein interaction90%
Tissue Expression6 tissues
Ovary
100%
Heart
92%
Bone Marrow
88%
Lung
86%
Liver
83%
Brain
73%
Gene Interaction Network
Click a node to explore
PYCR2P4HA1PRODHALDH4A1P4HA2PRODH2LAP3
PROTEIN STRUCTURE
Preparing viewer…
PDB6LHM Β· 3.40 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.03LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.70 [0.49–1.03]
RankingsWhere PYCR2 stands among ~20K protein-coding genes
  • #4,164of 20,598
    Most Researched114 Β· top quartile
  • #1,751of 5,498
    Most Pathogenic Variants32
  • #10,164of 17,882
    Most Constrained (LOEUF)1.03
Genes detectedPYCR2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma.
PMID: 31585088
Cell Β· 2019
1.00
2
Proline restores mitochondrial function and reverses aging hallmarks in senescent cells.
PMID: 38354087
Cell Rep Β· 2024
0.90
3
PYCR2 promotes growth and aerobic glycolysis in human liver cancer by regulating the AKT signaling pathway.
PMID: 37708598
Biochem Biophys Res Commun Β· 2023
0.80
4
Exploring metabolic alterations in PYCR2 deficiency: Unveiling pathways and clinical presentations of hypomyelinating leukodystrophy 10.
PMID: 38709052
Am J Med Genet A Β· 2024
0.70
5
Pyrroline-5-Carboxylate Reductase-2 Promotes Colorectal Cancer Progression via Activating PI3K/AKT/mTOR Pathway.
PMID: 34512817
Dis Markers Β· 2021
0.60