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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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RAB9B
RAB9B, member RAS oncogene family
Chromosome X · Xq22.2
NCBI Gene: 51209Ensembl: ENSG00000123570.5HGNC: HGNC:14090UniProt: Q9NP90
27PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
phagocytic vesicleGDP bindingprotein bindingreceptor-mediated endocytosisgastric cancerlarge cell medulloblastomachildhood supratentorial ependymomaatypical teratoid rhabdoid tumor
✦AI Summary

RAB9B is a small GTPase belonging to the RAS oncogene family that regulates intracellular membrane trafficking, particularly the retrograde transport pathway from endosomes to the trans-Golgi network (TGN). RAB9B functions in alternative autophagy mechanisms, with knockdown studies demonstrating that RAB9A and RAB9B are essential for mitophagy (mitochondrial autophagy) in mammalian cells, unlike conventional macroautophagy 1. The protein can bind to RUTBC2 effector in a similar manner to RAB9A, suggesting overlapping functional roles 2. RAB9B expression is regulated by miR-199a-5p, which attenuates retrograde transport and provides cellular protection against bacterial toxins like Shiga toxin by controlling transport from endosomes to the TGN 3. Clinical relevance includes associations with various diseases: RAB9B variants have been identified in hemophagocytic lymphohistiocytosis patients and show protein-protein interactions with known HLH genes 4, while the gene is incorporated into tumor microenvironment-based prognostic models for acute myeloid leukemia 5. Additionally, RAB9B loci have been associated with Parkinson's disease risk in Latin American populations through X-chromosome X studies 6.

Sources cited
1
RAB9A and RAB9B are essential for alternative autophagy and mitophagy in mammalian cells
PMID: 25831013
2
RAB9B can bind to RUTBC2 effector in a similar manner to RAB9A
PMID: 25220469
3
miR-199a-5p regulates RAB9B expression and controls retrograde transport from endosomes to TGN
PMID: 29555727
4
RAB9B variants identified in hemophagocytic lymphohistiocytosis patients with protein-protein interactions to known HLH genes
PMID: 35902954
5
RAB9B included in tumor microenvironment-based prognostic models for acute myeloid leukemia
PMID: 40608798
6
RAB9B loci associated with Parkinson's disease risk in Latin American X-chromosome association studies
PMID: 37469269
Disease Associationsⓘ20
gastric cancerOpen Targets
0.02Suggestive
large cell medulloblastomaOpen Targets
0.01Suggestive
childhood supratentorial ependymomaOpen Targets
0.01Suggestive
atypical teratoid rhabdoid tumorOpen Targets
0.01Suggestive
colorectal cancerOpen Targets
0.01Suggestive
ataxia telangiectasiaOpen Targets
0.01Suggestive
hepatocellular carcinomaOpen Targets
0.01Suggestive
psoriasisOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.00Suggestive
endometrial carcinomaOpen Targets
0.00Suggestive
acute myeloid leukemiaOpen Targets
0.00Suggestive
depressive disorderOpen Targets
0.00Suggestive
glioblastoma multiformeOpen Targets
0.00Suggestive
Ochoa syndromeOpen Targets
0.00Suggestive
Salmonella InfectionsOpen Targets
0.00Suggestive
ependymomaOpen Targets
0.00Suggestive
hemophagocytic syndromeOpen Targets
0.00Suggestive
lung cancerOpen Targets
0.00Suggestive
non-small cell lung carcinomaOpen Targets
0.00Suggestive
myelodysplastic syndromeOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
VPS11Protein interaction100%VPS16Protein interaction100%VPS33AProtein interaction100%GCC2Protein interaction93%PLEKHM2Protein interaction90%VPS33BProtein interaction89%
Tissue Expression6 tissues
Heart
100%
Brain
26%
Ovary
16%
Lung
1%
Bone Marrow
1%
Liver
0%
Gene Interaction Network
Click a node to explore
RAB9BVPS11VPS16VPS33AGCC2PLEKHM2VPS33B
PROTEIN STRUCTURE
Preparing viewer…
PDB2OCB · 2.20 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.53Moderately Constrained
pLIⓘ
0.93Intolerant
Observed/Expected LoF0.11 [0.04–0.53]
RankingsWhere RAB9B stands among ~20K protein-coding genes
  • #12,657of 20,598
    Most Researched27
  • #3,343of 17,882
    Most Constrained (LOEUF)0.53 · top quartile
Genes detectedRAB9B
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Sex differences in autophagy-mediated diseases: toward precision medicine.
PMID: 32264724
Autophagy · 2021
1.00
2
NBAS, a gene involved in cytotoxic degranulation, is recurrently mutated in pediatric hemophagocytic lymphohistiocytosis.
PMID: 35902954
J Hematol Oncol · 2022
0.90
3
Bioinformatics-guided construction of a tumor microenvironment-derived prognostic model in acute myeloid leukemia.
PMID: 40608798
PLoS One · 2025
0.80
4
X-Chromosome Association Study in Latin American Cohorts Identifies New Loci in Parkinson's Disease.
PMID: 37469269
Mov Disord · 2023
0.70
5
Crystal structure of the Rab9A-RUTBC2 RBD complex reveals the molecular basis for the binding specificity of Rab9A with RUTBC2.
PMID: 25220469
Structure · 2014
0.60