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25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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RAP1A
RAP1A, member of RAS oncogene family
Chromosome 1 · 1p13.2
NCBI Gene: 5906Ensembl: ENSG00000116473.16HGNC: HGNC:9855UniProt: A8KAH9
287PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneTumor Suppressor
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein localization to plasma membraneprotein bindingperinuclear region of cytoplasmcytoplasmcancerhypertrophic cardiomyopathyNoonan syndromeCostello syndrome
✦AI Summary

RAP1A is a small GTPase that serves multiple critical functions in vascular biology and cellular signaling. As a primary function, RAP1A regulates endothelial barrier integrity and vascular homeostasis through distinct mechanisms from its closely related isoform RAP1B 1. RAP1A specifically modulates endothelial calcium homeostasis by restricting Orai1-mediated store-operated calcium entry, thereby limiting inflammatory responses and vascular permeability 2. The protein also plays essential roles in integrin activation, where constitutively active RAP1A can bypass PKCα requirements and promote formation of integrin activation complexes containing talin and RIAM 3. In hepatocytes, RAP1A regulates glucose homeostasis by suppressing gluconeogenic gene expression through Akt-mediated FoxO1 inhibition, with its activity dependent on geranylgeranylation 4. RAP1A also controls PCSK9 expression post-transcriptionally via the RhoA-ROCK pathway, influencing cholesterol homeostasis 5. Additionally, RAP1A participates in neutrophil extracellular trap formation through the C5aR1/LTB4R1-Rap1a/B-Raf/ERK signaling pathway 6. Clinically, RAP1A dysfunction is associated with inflammatory lung injury, glucose intolerance, statin-induced metabolic side effects, and compromised immune responses in low birth weight newborns 246.

Sources cited
1
RAP1A has distinct functions from RAP1B in endothelial biology
PMID: 40508181
2
RAP1A modulates Orai1-mediated calcium entry to control endothelial inflammation and permeability
PMID: 39324266
3
RAP1A promotes integrin activation through formation of activation complexes
PMID: 18363565
4
RAP1A regulates hepatic glucose homeostasis through geranylgeranylation-dependent mechanisms
PMID: 36001955
5
RAP1A controls PCSK9 expression via RhoA-ROCK pathway
PMID: 38309417
6
RAP1A participates in NET formation through C5aR1/LTB4R1 signaling
PMID: 39303536
Disease Associationsⓘ20
cancerOpen Targets
0.60Moderate
hypertrophic cardiomyopathyOpen Targets
0.55Moderate
Noonan syndromeOpen Targets
0.53Moderate
Costello syndromeOpen Targets
0.50Moderate
cardiofaciocutaneous syndromeOpen Targets
0.37Weak
mathematical abilityOpen Targets
0.33Weak
smoking initiationOpen Targets
0.31Weak
neurodegenerative diseaseOpen Targets
0.31Weak
Moyamoya diseaseOpen Targets
0.25Weak
hepatocellular carcinomaOpen Targets
0.11Weak
neoplasmOpen Targets
0.10Weak
breast cancerOpen Targets
0.09Suggestive
non-small cell lung carcinomaOpen Targets
0.09Suggestive
colorectal carcinomaOpen Targets
0.08Suggestive
esophageal squamous cell carcinomaOpen Targets
0.08Suggestive
ovarian cancerOpen Targets
0.08Suggestive
AnxietyOpen Targets
0.08Suggestive
congenital rubellaOpen Targets
0.07Suggestive
gastric cancerOpen Targets
0.06Suggestive
benign prostatic hyperplasiaOpen Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
VAV1Protein interaction100%NCF1Protein interaction100%PIK3CAProtein interaction100%PIK3CDProtein interaction100%PIK3CBProtein interaction100%VAV2Protein interaction100%
Tissue Expression6 tissues
Brain
100%
Heart
99%
Lung
77%
Bone Marrow
44%
Liver
40%
Ovary
33%
Gene Interaction Network
Click a node to explore
RAP1AVAV1NCF1PIK3CAPIK3CDPIK3CBVAV2
PROTEIN STRUCTURE
Preparing viewer…
PDB4KVG · 1.65 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.43Moderately Constrained
pLIⓘ
0.99Intolerant
Observed/Expected LoF0.19 [0.09–0.43]
RankingsWhere RAP1A stands among ~20K protein-coding genes
  • #1,251of 20,598
    Most Researched287 · top 10%
  • #2,334of 17,882
    Most Constrained (LOEUF)0.43 · top quartile
Genes detectedRAP1A
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
The arginine methyltransferase PRMT7 promotes extravasation of monocytes resulting in tissue injury in COPD.
PMID: 35288557
Nat Commun · 2022
1.00
2
Divergent Functions of Rap1A and Rap1B in Endothelial Biology and Disease.
PMID: 40508181
Int J Mol Sci · 2025
0.90
3
Integrin activation.
PMID: 18363565
Biochem Soc Trans · 2008
0.80
4
ArhGEF12 activates Rap1A and not RhoA in human dermal microvascular endothelial cells to reduce tumor necrosis factor-induced leak.
PMID: 35294066
FASEB J · 2022
0.70
5
RAP GTPases and platelet integrin signaling.
PMID: 29863951
Platelets · 2019
0.64