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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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RAVER1
ribonucleoprotein, PTB binding 1
Chromosome 19 · 19p13.2
NCBI Gene: 125950Ensembl: ENSG00000161847.15HGNC: HGNC:30296UniProt: A0A087WZ13
113PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA bindingprotein bindingnucleic acid bindingnucleusCOVID-19rheumatoid arthritisgenetic disorderpsoriasis
✦AI Summary

RAVER1 is a dual-compartment ribonucleoprotein that functions as a critical co-factor in regulated alternative splicing, primarily through cooperation with PTBP1 1. The protein contains three RNA recognition motifs and four PTB-Raver1 interacting domains (PRIs) that bind specifically to PTBP1's second RNA recognition motif, enabling modulation of splicing events such as exon skipping and mutual exon switching in genes like TPM1 2. Beyond splicing regulation, RAVER1 serves as a scaffold protein at focal adhesions and microfilament attachment sites, where it interacts with vinculin and directs mRNA cargo to sites of local protein synthesis 3. In cancer cells, RAVER1 promotes proliferation and restricts apoptosis by controlling alternative splicing within the miR/RISC pathway, particularly modulating GW-enriched motifs in TNRC6 proteins essential for AGO2-binding and miR/RISC complex formation, thereby preventing lethal TGFB-driven epithelial-mesenchymal transition 4. RAVER1 dysregulation has emerged as clinically relevant in craniopharyngiomas, where loss of RAVER1 expression is associated with oncogenic processes and represents a potential therapeutic target 5. Additionally, RAVER1 variants identified in COVID-19 GWAS studies influence antiviral immunity through the MDA5/RAVER1 pathway, affecting ICAM1 expression and disease severity 6.

Sources cited
1
RAVER1 is a dual compartment protein interacting with PTB/hnRNPI and microfilament attachment proteins
PMID: 11724819
2
Structural basis of RAVER1-PTB interaction through PRIs binding to PTB's RRM2
PMID: 22153504
3
RAVER1 interacts with activated vinculin and binds RNA, functioning as a scaffold for mRNA targeting to focal adhesions
PMID: 19523901
4
RAVER1 modulates cancer cell proliferation and apoptosis through miR/RISC pathway splicing control, preventing lethal EMT
PMID: 38300787
5
RAVER1 is dysregulated in craniopharyngiomas and identified as a tumor suppressor and therapeutic target
PMID: 40581690
6
RAVER1 variants affect COVID-19 severity through the MDA5/RAVER1 antiviral pathway
PMID: 34998241
Disease Associationsⓘ20
COVID-19Open Targets
0.16Weak
rheumatoid arthritisOpen Targets
0.16Weak
genetic disorderOpen Targets
0.12Weak
psoriasisOpen Targets
0.11Weak
ankylosing spondylitisOpen Targets
0.11Weak
Crohn's diseaseOpen Targets
0.11Weak
type 1 diabetes mellitusOpen Targets
0.09Suggestive
autoimmune diseaseOpen Targets
0.09Suggestive
sclerosing cholangitisOpen Targets
0.09Suggestive
ulcerative colitisOpen Targets
0.09Suggestive
neoplasmOpen Targets
0.08Suggestive
Hereditary persistence of fetal hemoglobin - beta-thalassemiaOpen Targets
0.04Suggestive
hereditary persistence of fetal hemoglobin-beta-thalassemia syndromeOpen Targets
0.04Suggestive
ThrombocytopeniaOpen Targets
0.04Suggestive
thrombocytopenia, anemia, and myelofibrosisOpen Targets
0.04Suggestive
Tyrosinemia type 1Open Targets
0.03Suggestive
glycoprotein storage diseaseOpen Targets
0.03Suggestive
hemoglobin H diseaseOpen Targets
0.03Suggestive
Hemoglobin C - beta-thalassemiaOpen Targets
0.03Suggestive
hemoglobin C-beta-thalassemia syndromeOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
HNRNPCProtein interaction100%VCLProtein interaction100%RRM2Protein interaction93%PTBP1Protein interaction88%HNRNPDLProtein interaction88%PTBP2Protein interaction85%
Tissue Expression6 tissues
Ovary
100%
Lung
83%
Bone Marrow
75%
Brain
70%
Liver
49%
Heart
19%
Gene Interaction Network
Click a node to explore
RAVER1HNRNPCVCLRRM2PTBP1HNRNPDLPTBP2
PROTEIN STRUCTURE
Preparing viewer…
PDB3SMZ · 1.99 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.89LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.66 [0.49–0.89]
RankingsWhere RAVER1 stands among ~20K protein-coding genes
  • #4,201of 20,598
    Most Researched113 · top quartile
  • #7,970of 17,882
    Most Constrained (LOEUF)0.89
Genes detectedRAVER1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Creation of de novo cryptic splicing for ALS and FTD precision medicine.
PMID: 39361759
Science · 2024
1.00
2
Impaired splicing machinery in craniopharyngiomas unveils PRPF8 and RAVER1 as novel biomarkers and therapeutic targets.
PMID: 40581690
Acta Neuropathol Commun · 2025
0.90
3
RAVER1 hinders lethal EMT and modulates miR/RISC activity by the control of alternative splicing.
PMID: 38300787
Nucleic Acids Res · 2024
0.80
4
Raver1 interactions with vinculin and RNA suggest a feed-forward pathway in directing mRNA to focal adhesions.
PMID: 19523901
Structure · 2009
0.70
5
CRISPRi links COVID-19 GWAS loci to LZTFL1 and RAVER1.
PMID: 34998241
EBioMedicine · 2022
0.60