HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
RPA3
replication protein A3
Chromosome 7 · 7p21.3
NCBI Gene: 6119Ensembl: ENSG00000106399.12HGNC: HGNC:10291UniProt: A4D105
176PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
DNA RepairHomologous RecombinationHub Gene
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
single-stranded DNA bindingnucleotide-excision repairmismatch repairdamaged DNA bindingneurodegenerative diseaseobesityiron metabolism diseasebiliary tract disease
✦AI Summary

RPA3 is the smallest subunit of the heterotrimeric replication protein A (RPA) complex, which binds and stabilizes single-stranded DNA during DNA replication and stress responses 1. As part of canonical RPA, it recruits repair factors including RAD51 and RAD52 for double-strand break repair, and XPA/XPG for nucleotide excision repair 2. RPA3 possesses direct ssDNA-binding activity, potentially determining complex polarity on DNA 1. It also functions within an alternative RPA complex (aRPA) containing RPA4, which antagonistically regulates CAG repeat expansions in neurodegenerative diseases—while canonical RPA suppresses expansions and rescues motor phenotypes in SCA1 models, aRPA promotes expansions 3. Clinically, RPA3 dysregulation associates with multiple malignancies. High RPA3 expression in gliomas correlates with poor prognosis through PI3K-AKT-mTOR pathway activation, promoting proliferation and invasion 4. In nasopharyngeal carcinoma, elevated RPA3 enhances radioresistance via increased DNA repair and RAD51 foci formation, predicting poor survival 5. Genetic variants in RPA3 show protective associations against glioma susceptibility in Chinese populations 6, and RPA3 variants appear enriched in pediatric cancer cohorts 7. Additionally, RPA3 variants associate with rheumatoid arthritis-interstitial lung disease risk 8, suggesting broader inflammatory implications.

Sources cited
1
RPA3 interacts directly with ssDNA on the 3' side and contains a structural motif for DNA binding
PMID: 19010961
2
RPA recruits XPA and XPG proteins for nucleotide excision repair
PMID: 7697716
3
Canonical RPA suppresses CAG repeat expansions while alternative RPA antagonistically promotes expansions; RPA overexpression in SCA1 brains rescues motor phenotypes
PMID: 37827155
4
RPA3 is highly expressed in gliomas and promotes proliferation, migration, and invasion through PI3K-AKT-mTOR pathway activation
PMID: 37571896
5
High RPA3 expression in nasopharyngeal carcinoma enhances radioresistance, DNA repair capacity, and RAD51 foci formation; associates with poor survival
PMID: 28557284
6
RPA3 genetic variants show protective associations against glioma risk in Chinese Han population
PMID: 23573956
7
Germline RPA1 variants are enriched in pediatric cancer cohorts; RPA3 variants identified in cancer patients
PMID: 37869077
8
RPA3 genetic variants associate with rheumatoid arthritis-interstitial lung disease risk
PMID: 32737115
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.36Weak
obesityOpen Targets
0.31Weak
iron metabolism diseaseOpen Targets
0.29Weak
biliary tract diseaseOpen Targets
0.22Weak
non-small cell lung adenocarcinomaOpen Targets
0.12Weak
anemia (phenotype)Open Targets
0.09Suggestive
toxic epidermal necrolysisOpen Targets
0.08Suggestive
nasopharyngeal carcinomaOpen Targets
0.08Suggestive
Alzheimer diseaseOpen Targets
0.08Suggestive
Stevens-Johnson syndromeOpen Targets
0.07Suggestive
HyperhidrosisOpen Targets
0.07Suggestive
hypertensionOpen Targets
0.05Suggestive
cancerOpen Targets
0.05Suggestive
myocardial infarctionOpen Targets
0.04Suggestive
essential hypertensionOpen Targets
0.04Suggestive
gliomaOpen Targets
0.04Suggestive
gastric cancerOpen Targets
0.03Suggestive
Increased blood pressureOpen Targets
0.03Suggestive
cardiovascular diseaseOpen Targets
0.03Suggestive
breast cancerOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PCNAProtein interaction100%RAD23BProtein interaction100%CLSPNProtein interaction100%TOP3AProtein interaction100%RMI1Protein interaction100%TIPINProtein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
92%
Liver
55%
Heart
43%
Lung
31%
Ovary
31%
Gene Interaction Network
Click a node to explore
RPA3PCNARAD23BCLSPNTOP3ARMI1TIPIN
PROTEIN STRUCTURE
Preparing viewer…
PDB3KDF · 1.98 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.97LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF2.06 [1.08–1.97]
RankingsWhere RPA3 stands among ~20K protein-coding genes
  • #2,490of 20,598
    Most Researched176 · top quartile
  • #17,778of 17,882
    Most Constrained (LOEUF)1.97
Genes detectedRPA3
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
Antagonistic roles of canonical and Alternative-RPA in disease-associated tandem CAG repeat instability.
PMID: 37827155
Cell · 2023
1.00
2
Integrated analysis of single-cell RNA-seq and spatial transcriptomics to identify the lactylation-related protein TUBB2A as a potential biomarker for glioblastoma in cancer cells by machine learning.
PMID: 40642071
Front Immunol · 2025
0.90
3
TP53 and RPA3 gene variations were associated with risk of glioma in a Chinese Han population.
PMID: 23573956
Cancer Biother Radiopharm · 2013
0.80
4
Germline landscape of
PMID: 37869077
Front Oncol · 2023
0.70
5
Non-enzymatic SETD1A activity drives breast cancer cell proliferation via cyclin K.
PMID: 40790603
Breast Cancer Res · 2025
0.64