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GeneE
20 sources retrieved Ā· Most recent: April 2026 Ā· Index updated 14 days ago
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RRP12
ribosomal RNA processing 12 homolog
Chromosome 10 Ā· 10q24.1
NCBI Gene: 23223Ensembl: ENSG00000052749.15HGNC: HGNC:29100UniProt: B3KMR5
173PubMed Papers
20Diseases
0Drugs
2Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
Trending
DATA QUALITY
āœ“ Experimental GO Evidenceāœ“ Swiss-Prot Reviewed
RNA bindingnucleolusplasma membranenuclear membraneneurodegenerative diseasecolorectal carcinomahepatocellular carcinomaneoplasm
✦AI Summary

RRP12 (ribosomal RNA processing 12 homolog) is a nucleolar protein essential for ribosomal RNA metabolism and ribosomal subunit biogenesis. Functionally, RRP12 participates in the nucleoplasmic maturation phase of 40S pre-ribosomal subunit assembly, where it is recruited early to 90S precursors and subsequently re-positioned to facilitate head rearrangements 1. Structural studies show RRP12 localizes to late-stage human 40S assembly intermediates, contributing to distinct immature rRNA conformations during subunit head formation 2. At the molecular level, RRP12 coordinates with assembly factors TSR1, BUD23-TRMT112, and export factor SLX9 to provide export competence to pre-40S particles 1. Disease relevance has been recently established: biallelic RRP12 variants (missense mutations including p.R520C, p.E477K, p.F878L) cause autosomal recessive primary brain calcifications with infantile-onset generalized dystonia, spasticity, and widespread brain calcifications 3. Patient-derived fibroblasts show significant RRP12 protein reduction and abnormal nucleolar morphology, while zebrafish rrp12 knockdown causes severe developmental delay, crimping, and early lethality 3. Clinically, RRP12 overexpression suppresses p53 activity and promotes resistance to cytotoxic stress in cancer cells 4, suggesting RRP12 targeting may enhance chemotherapy efficacy. Additionally, RRP12 appears dysregulated in hepatocellular carcinoma and colorectal cancer, identifying it as a potential biomarker and therapeutic target 56.

Sources cited
1
Biallelic RRP12 variants cause autosomal recessive brain calcifications with dystonia; loss-of-function leads to reduced RRP12 protein, abnormal nucleolar morphology, and developmental defects
PMID: 41059649
2
RRP12 is recruited early to 90S precursors and re-positioned during nucleoplasmic maturation to facilitate 40S head rearrangements
PMID: 36321656
3
RRP12 localizes to late-stage human 40S assembly intermediates with distinct immature rRNA conformations
PMID: 29875412
4
RRP12 overexpression suppresses p53 activity and promotes resistance to cytotoxic stress in osteosarcoma cells
PMID: 26499779
5
RRP12 is upregulated in hepatocellular carcinoma and included in ALT-related prognostic biomarkers
PMID: 39529015
6
RRP12 is identified as a hub gene in colorectal cancer-related modules through bioinformatics analysis
PMID: 39949372
7
RRP12 associates with late 40S precursors and exhibits partial cytoplasmic mislocalization upon loss of Rio2
PMID: 21097556
Disease Associationsā“˜20
neurodegenerative diseaseOpen Targets
0.43Moderate
colorectal carcinomaOpen Targets
0.08Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.05Suggestive
cancerOpen Targets
0.03Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.02Suggestive
adenomaOpen Targets
0.02Suggestive
liver cancerOpen Targets
0.02Suggestive
Abnormality of the skeletal systemOpen Targets
0.02Suggestive
osteosarcomaOpen Targets
0.01Suggestive
colorectal cancerOpen Targets
0.01Suggestive
carcinomaOpen Targets
0.01Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.01Suggestive
rubellaOpen Targets
0.01Suggestive
lymph node metastatic carcinomaOpen Targets
0.01Suggestive
calcificationOpen Targets
0.00Suggestive
generalized dystoniaOpen Targets
0.00Suggestive
acute myeloid leukemiaOpen Targets
0.00Suggestive
clear cell renal carcinomaOpen Targets
0.00Suggestive
gastric cancerOpen Targets
0.00Suggestive
Pathogenic Variants2
NM_015179.4(RRP12):c.1429G>A (p.Glu477Lys)Pathogenic
Basal ganglia calcification, idiopathic, 11, autosomal recessive
ā˜†ā˜†ā˜†ā˜†2025→ Residue 477
NM_015179.4(RRP12):c.2634T>G (p.Phe878Leu)Pathogenic
Basal ganglia calcification, idiopathic, 11, autosomal recessive
ā˜†ā˜†ā˜†ā˜†2025→ Residue 878
View on ClinVar ↗
Related Genes
CSNK1A1Protein interaction100%TSR1Protein interaction100%DHX32Protein interaction100%DQX1Protein interaction100%MYBBP1AProtein interaction99%LTV1Protein interaction99%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
RRP12CSNK1A1TSR1DHX32DQX1MYBBP1ALTV1
PROTEIN STRUCTURE
Preparing viewer…
PDB7WTU Ā· 3.00 ƅ Ā· EM
View on RCSB ↗
Constraintā“˜
LOEUFā“˜
0.56Moderately Constrained
pLIā“˜
0.00Tolerant
Observed/Expected LoF0.46 [0.37–0.56]
RankingsWhere RRP12 stands among ~20K protein-coding genes
  • #2,556of 20,598
    Most Researched173 Ā· top quartile
  • #4,257of 5,498
    Most Pathogenic Variants2
  • #3,645of 17,882
    Most Constrained (LOEUF)0.56 Ā· top quartile
Genes detectedRRP12
Sources retrieved20 papers
Response time—
šŸ“„ Sources
20ā–¼
1
RRP12 Variants Are Associated With Autosomal Recessive Brain Calcifications.
PMID: 41059649
Mov Disord Ā· 2025
1.00
2
Identification of Novel lncRNAs Related to Colorectal Cancer Through Bioinformatics Analysis.
PMID: 39949372
Biomed Res Int Ā· 2025
0.90
3
The nucleoplasmic phase of pre-40S formation prior to nuclear export.
PMID: 36321656
Nucleic Acids Res Ā· 2022
0.80
4
RRP12 is a crucial nucleolar protein that regulates p53 activity in osteosarcoma cells.
PMID: 26499779
Tumour Biol Ā· 2016
0.70
5
A comprehensive protein interaction map and druggability investigation prioritized dengue virus NS1 protein as promising therapeutic candidate.
PMID: 37498862
PLoS One Ā· 2023
0.60