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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SCAF8
SR-related CTD associated factor 8
Chromosome 6 · 6q25.2
NCBI Gene: 22828Ensembl: ENSG00000213079.10HGNC: HGNC:20959UniProt: A0A0A0MT33
63PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
positive regulation of DNA-templated transcription, elongationnegative regulation of termination of RNA polymerase II transcription, poly(A)-couplednucleoplasmnucleusasthmaallergic rhinitisovarian dysfunctionretinal artery occlusion
✦AI Summary

SCAF8 (SR-related CTD associated factor 8) is an mRNA anti-terminator protein that prevents premature transcription termination during RNA polymerase II (RNAPII) transcription. SCAF8 functions by binding to the phosphorylated C-terminal domain (CTD) of RNAPII and subsequently binding nascent RNA upstream of early polyadenylation sites to suppress their use 1. This mechanism prevents accumulation of non-functional truncated proteins lacking essential domains. SCAF8 works redundantly with its paralog SCAF4 to suppress early mRNA termination, while also functioning independently as an RNAPII elongation factor 1. Beyond its canonical termination role, SCAF8 modulates alternative splicing by directly driving exon inclusion across hundreds of endogenous genes 2. Recent evidence shows SCAF8 abundance is kinase-dependent, with CDK7 inhibition causing nuclear depletion of SCAF8 and triggering widespread 3' end readthrough transcription 3. The protein contains a CTD-interacting domain (CID) that specifically recognizes phosphorylated RNAPII CTD sequences, enabling stage-specific transcriptional control 4. Clinically, SCAF8 variants are associated with IgA nephropathy susceptibility, suggesting roles in immune regulation 5. Loss of SCAF8 expression is lethal in human cells due to its essential role in coordinating transcription elongation and termination.

Sources cited
1
SCAF8 is an mRNA anti-terminator that prevents early polyadenylation, binds phosphorylated RNAPII CTD, and functions as an RNAPII elongation factor
PMID: 31104839
2
SCAF8 modulates hundreds of endogenous splicing events and drives alternative exon inclusion
PMID: 38168984
3
SCAF8 is a CDK7-dependent elongation and termination factor subject to nuclear depletion during CDK7 inhibition
PMID: 40570372
4
SCAF8 contains a CTD-interacting domain (CID) that recognizes phosphorylated RNAPII CTD sequences
PMID: 41361092
5
SCAF8 variants are associated with IgA nephropathy susceptibility in genome-wide analysis
PMID: 39343836
Disease Associationsⓘ20
asthmaOpen Targets
0.40Weak
allergic rhinitisOpen Targets
0.36Weak
ovarian dysfunctionOpen Targets
0.31Weak
retinal artery occlusionOpen Targets
0.29Weak
respiratory system diseaseOpen Targets
0.29Weak
ankylosing spondylitisOpen Targets
0.28Weak
liver diseaseOpen Targets
0.27Weak
diabetic nephropathyOpen Targets
0.17Weak
metabolic diseaseOpen Targets
0.08Suggestive
attention deficit hyperactivity disorderOpen Targets
0.07Suggestive
hereditary attention deficit-hyperactivity disorderOpen Targets
0.06Suggestive
hypertension, pregnancy-inducedOpen Targets
0.05Suggestive
attention deficit-hyperactivity disorder 8Open Targets
0.05Suggestive
intellectual disability, autosomal recessive 59Open Targets
0.05Suggestive
schizophrenia 15Open Targets
0.05Suggestive
autismOpen Targets
0.05Suggestive
Tourette syndromeOpen Targets
0.05Suggestive
Phelan-McDermid syndromeOpen Targets
0.04Suggestive
8p23.1 microdeletion syndromeOpen Targets
0.04Suggestive
Potocki-Lupski syndromeOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CPSF2Protein interaction100%WDR33Protein interaction100%SYMPKProtein interaction100%CPSF7Protein interaction98%SETXProtein interaction95%POLR2AProtein interaction93%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
64%
Ovary
56%
Heart
54%
Lung
40%
Liver
29%
Gene Interaction Network
Click a node to explore
SCAF8CPSF2WDR33SYMPKCPSF7SETXPOLR2A
PROTEIN STRUCTURE
Preparing viewer…
PDB3D9J · 1.60 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.28Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.19 [0.13–0.28]
RankingsWhere SCAF8 stands among ~20K protein-coding genes
  • #7,401of 20,598
    Most Researched63
  • #988of 17,882
    Most Constrained (LOEUF)0.28 · top 10%
Genes detectedSCAF8
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
SCAF4 and SCAF8, mRNA Anti-Terminator Proteins.
PMID: 31104839
Cell · 2019
1.00
2
Large-scale evaluation of the ability of RNA-binding proteins to activate exon inclusion.
PMID: 38168984
Nat Biotechnol · 2024
0.90
3
Heat shock induces premature transcript termination and reconfigures the human transcriptome.
PMID: 35114099
Mol Cell · 2022
0.80
4
Identification of susceptibility loci and relevant cell type for IgA nephropathy in Han Chinese by integrative genome-wide analysis.
PMID: 39343836
Front Med · 2024
0.70
5
Multi-omics and biochemical reconstitution reveal CDK7-dependent mechanisms controlling RNA polymerase II function at gene 5'- and 3' ends.
PMID: 40570372
Cell Rep · 2025
0.60