HomeAboutRankingsData Sources
ยฉ 2026 GeneE
๐Ÿงฌ
GeneE
10 sources retrieved ยท Most recent: April 2026 ยท Index updated 14 days ago
โ“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
SCN11A
sodium voltage-gated channel alpha subunit 11
Chromosome 3 ยท 3p22.2
NCBI Gene: 11280Ensembl: ENSG00000168356.13HGNC: HGNC:10583UniProt: Q9UI33
39PubMed Papers
22Diseases
75Drugs
9Pathogenic Variants
FUNCTIONAL ROLE
Ion ChannelTransporter
CLINICAL
FDA Approved TargetOMIM Disease Gene
DATA QUALITY
โœ“ Experimental GO Evidenceโœ“ Swiss-Prot Reviewed
sensory perception of painmembrane depolarization during action potentialextracellular exosomeplasma membranefamilial episodic pain syndrome with predominantly lower limb involvementhereditary sensory and autonomic neuropathy type 7familial episodic pain syndromemajor depressive disorder
โœฆAI Summary

SCN11A encodes Nav1.9, a voltage-gated sodium channel that plays a critical role in nociceptive signaling and pain perception. The protein mediates sodium ion permeability in excitable membranes and is preferentially expressed in nociceptive primary sensory neurons of dorsal root ganglia and trigeminal ganglia 1. Nav1.9 is essential for membrane depolarization during action potentials in nociceptors, which serve as key relay stations for transmitting pain signals from the periphery to the central nervous system 2. Gain-of-function mutations in SCN11A cause painful conditions including familial episodic pain syndrome type 3 and hereditary sensory and autonomic neuropathy type 7 3. These mutations are associated with erythromelalgia and small fiber neuropathy, conditions characterized by severe episodic pain and neuropathic symptoms 45. Interestingly, while most Nav1.9 mutations lead to painful conditions, a few rare mutations have been reported to cause pain insensitivity 2. The channel's critical role in pain signaling, combined with its low expression in the central nervous system and heart, makes it an attractive target for developing novel analgesic drugs 6.

Sources cited
1
SCN11A encodes Nav1.9, preferentially expressed in nociceptive primary sensory neurons of dorsal root ganglia and trigeminal ganglia
PMID: 12428758
2
Nav1.9 is essential for pain signaling in dorsal root ganglia neurons and gain-of-function mutations cause painful conditions while rare mutations cause pain insensitivity
PMID: 32601768
3
Pathogenic variants in SCN11A cause familial episodic pain syndrome with severe episodic limb pain
PMID: 38999942
4
SCN11A mutations are associated with erythromelalgia, a rare syndrome of painful hyperperfused skin areas
PMID: 29299961
5
SCN11A variants are found in small fiber neuropathy patients with neuropathic pain and autonomic symptoms
PMID: 39433284
6
Nav1.9's role in pain pathways and low CNS/heart expression make it an attractive analgesic drug target
PMID: 25846613
Disease Associationsโ“˜22
familial episodic pain syndrome with predominantly lower limb involvementOpen Targets
0.80Strong
hereditary sensory and autonomic neuropathy type 7Open Targets
0.79Strong
familial episodic pain syndromeOpen Targets
0.69Moderate
major depressive disorderOpen Targets
0.62Moderate
PainOpen Targets
0.61Moderate
epilepsyOpen Targets
0.61Moderate
bipolar disorderOpen Targets
0.61Moderate
SeizureOpen Targets
0.60Moderate
migraine disorderOpen Targets
0.60Moderate
partial epilepsyOpen Targets
0.60Moderate
PruritusOpen Targets
0.59Moderate
cardiac arrhythmiaOpen Targets
0.58Moderate
trigeminal neuralgiaOpen Targets
0.58Moderate
amyotrophic lateral sclerosisOpen Targets
0.58Moderate
hemorrhoidOpen Targets
0.58Moderate
Back painOpen Targets
0.58Moderate
atrial fibrillationOpen Targets
0.57Moderate
Ventricular arrhythmiaOpen Targets
0.57Moderate
alcohol dependenceOpen Targets
0.57Moderate
Lennox-Gastaut syndromeOpen Targets
0.57Moderate
Episodic pain syndrome, familial, 3UniProt
Neuropathy, hereditary sensory and autonomic, 7UniProt
Pathogenic Variants9
NM_001349253.2(SCN11A):c.664C>A (p.Arg222Ser)Pathogenic
Familial episodic pain syndrome with predominantly lower limb involvement|not provided
โ˜…โ˜…โ˜†โ˜†2025โ†’ Residue 222
NM_001349253.2(SCN11A):c.665G>A (p.Arg222His)Pathogenic
not provided|Hereditary sensory and autonomic neuropathy type 7;Familial episodic pain syndrome with predominantly lower limb involvement|Familial episodic pain syndrome with predominantly lower limb involvement
โ˜…โ˜…โ˜†โ˜†2024โ†’ Residue 222
NM_001349253.2(SCN11A):c.673C>T (p.Arg225Cys)Pathogenic
Familial episodic pain syndrome with predominantly lower limb involvement|Hereditary sensory and autonomic neuropathy type 7;Familial episodic pain syndrome with predominantly lower limb involvement|Inborn genetic diseases|not provided
โ˜…โ˜…โ˜†โ˜†2024โ†’ Residue 225
NM_001349253.2(SCN11A):c.1187T>C (p.Leu396Pro)Pathogenic
not provided|Hereditary sensory and autonomic neuropathy type 7
โ˜…โ˜…โ˜†โ˜†2017โ†’ Residue 396
NM_001349253.2(SCN11A):c.197A>C (p.Tyr66Ser)Likely pathogenic
Familial episodic pain syndrome with predominantly lower limb involvement
โ˜…โ˜†โ˜†โ˜†2024โ†’ Residue 66
NM_001349253.2(SCN11A):c.2423C>A (p.Ala808Asp)Likely pathogenic
Congenital sensory neuropathy with selective loss of small myelinated fibers
โ˜…โ˜†โ˜†โ˜†2019โ†’ Residue 808
NM_001349253.2(SCN11A):c.1717G>A (p.Val573Met)Likely pathogenic
not provided
โ˜…โ˜†โ˜†โ˜†2017โ†’ Residue 573
NM_001349253.2(SCN11A):c.2432T>C (p.Leu811Pro)Pathogenic
Hereditary sensory and autonomic neuropathy type 7
โ˜†โ˜†โ˜†โ˜†2015โ†’ Residue 811
NM_001349253.2(SCN11A):c.2423C>G (p.Ala808Gly)Pathogenic
Familial episodic pain syndrome with predominantly lower limb involvement
โ˜†โ˜†โ˜†โ˜†2013โ†’ Residue 808
View on ClinVar โ†—
Drug Targets75
AFACIFENACINPhase II
Muscarinic acetylcholine receptor antagonist
overactive bladder
ARTICAINEApproved
Sodium channel alpha subunit blocker
ARTICAINE HYDROCHLORIDEApproved
Sodium channel alpha subunit blocker
BENOXINATEApproved
Sodium channel alpha subunit blocker
Pruritus
BENOXINATE HYDROCHLORIDEPhase III
Sodium channel alpha subunit blocker
CARBAMAZEPINEApproved
Sodium channel alpha subunit blocker
epilepsy
CENOBAMATEApproved
Sodium channel alpha subunit inhibitor
Seizure
CHLOROPROCAINEApproved
Sodium channel alpha subunit blocker
CHLOROPROCAINE HYDROCHLORIDEPhase III
Sodium channel alpha subunit blocker
COCAINEApproved
Sodium channel alpha subunit blocker
COCAINE HYDROCHLORIDEApproved
Sodium channel alpha subunit blocker
DISOPYRAMIDEApproved
Sodium channel alpha subunit blocker
cardiac arrhythmia
DISOPYRAMIDE PHOSPHATEApproved
Sodium channel alpha subunit blocker
Ventricular arrhythmia
DRONEDARONEApproved
Sodium channel alpha subunit blocker
cardiac arrhythmia
DRONEDARONE HYDROCHLORIDEApproved
Sodium channel alpha subunit blocker
atrial fibrillation
DYCLONINEApproved
Sodium channel alpha subunit blocker
Pain
DYCLONINE HYDROCHLORIDEUNKNOWN
Sodium channel alpha subunit blocker
ENCAINIDEApproved
Sodium channel alpha subunit blocker
cardiac arrhythmia
ENCAINIDE HYDROCHLORIDEUNKNOWN
Sodium channel alpha subunit blocker
ESLICARBAZEPINEApproved
Sodium channel alpha subunit blocker
epilepsy
ESLICARBAZEPINE ACETATEApproved
Sodium channel alpha subunit blocker
Seizure
ETHOTOINApproved
Sodium channel alpha subunit blocker
Seizure
ETIDOCAINEApproved
Sodium channel alpha subunit blocker
Pain
EVENAMIDEPhase III
Sodium channel alpha subunit blocker
treatment refractory schizophrenia
FOSPHENYTOINApproved
Sodium channel alpha subunit blocker
epilepsy
FOSPHENYTOIN SODIUMApproved
Sodium channel alpha subunit blocker
HEXYLCAINEApproved
Sodium channel alpha subunit blocker
INDECAINIDEApproved
Sodium channel alpha subunit blocker
IRAMPANELPhase I
Glutamate receptor ionotropic AMPA antagonist
LACOSAMIDEApproved
Sodium channel alpha subunit blocker
epilepsy
LAMOTRIGINEApproved
Sodium channel alpha subunit blocker
epilepsy
LIDOCAINEApproved
Sodium channel alpha subunit blocker
premature ejaculation
LIDOCAINE HYDROCHLORIDEApproved
Sodium channel alpha subunit blocker
Pain
MEPHENYTOINApproved
Sodium channel alpha subunit blocker
epilepsy
MEPIVACAINEApproved
Sodium channel alpha subunit blocker
pain agnosia
MEPIVACAINE HYDROCHLORIDEPhase III
Sodium channel alpha subunit blocker
MEXILETINEApproved
Sodium channel alpha subunit blocker
cardiac arrhythmia
MEXILETINE HYDROCHLORIDEApproved
Sodium channel alpha subunit blocker
Ventricular arrhythmia
MORICIZINEApproved
Sodium channel alpha subunit blocker
cardiac arrhythmia
NERISPIRDINEPhase II
Voltage-gated potassium channel blocker
multiple sclerosis
NKTR-171IND
Sodium channel alpha subunit blocker
neuropathic pain
ORPHENADRINEApproved
Glutamate [NMDA] receptor antagonist
Parkinson disease
ORPHENADRINE CITRATEApproved
Glutamate [NMDA] receptor antagonist
Pain
ORPHENADRINE HYDROCHLORIDEApproved
Histamine H1 receptor antagonist
Parkinson disease
OXCARBAZEPINEApproved
Sodium channel alpha subunit blocker
epilepsy
PHENACEMIDEApproved
Sodium channel alpha subunit blocker
epilepsy
PHENAZOPYRIDINEApproved
Sodium channel alpha subunit blocker
Pain
PHENAZOPYRIDINE HYDROCHLORIDEPhase III
Sodium channel alpha subunit blocker
urinary tract infection
PHENYTOINApproved
Sodium channel alpha subunit blocker
epilepsy
PHENYTOIN SODIUMApproved
Sodium channel alpha subunit blocker
epilepsy
PRILOCAINEApproved
Sodium channel alpha subunit blocker
Pain
PRILOCAINE HYDROCHLORIDEUNKNOWN
Sodium channel alpha subunit blocker
PRIMIDONEApproved
GABA-A receptor; anion channel positive allosteric modulator
epilepsy
PROCAINAMIDEApproved
Sodium channel alpha subunit blocker
cardiac arrhythmia
PROCAINAMIDE HYDROCHLORIDEApproved
Sodium channel alpha subunit blocker
PROCAINEApproved
Sodium channel alpha subunit blocker
hemorrhoid
PROCAINE HYDROCHLORIDEPhase II
Sodium channel alpha subunit blocker
HIV infection
PROPAFENONEApproved
Beta-1 adrenergic receptor antagonist
cardiac arrhythmia
PROPAFENONE HYDROCHLORIDEApproved
Beta-1 adrenergic receptor antagonist
PROPARACAINEApproved
Sodium channel alpha subunit blocker
PROPARACAINE HYDROCHLORIDEUNKNOWN
Sodium channel alpha subunit blocker
PROPOXYCAINEApproved
Sodium channel alpha subunit blocker
Pain
QUINIDINEApproved
Sodium channel alpha subunit blocker
cardiac arrhythmia
QUINIDINE GLUCONATEApproved
Sodium channel alpha subunit blocker
QUINIDINE SULFATEApproved
Sodium channel alpha subunit blocker
RALFINAMIDEPhase III
Glutamate [NMDA] receptor antagonist
neuropathic pain
RILUZOLEApproved
Sodium channel alpha subunit blocker
amyotrophic lateral sclerosis
ROPIVACAINEApproved
Sodium channel alpha subunit blocker
ROPIVACAINE HYDROCHLORIDEApproved
Sodium channel alpha subunit blocker
Pain
RUFINAMIDEApproved
Sodium channel alpha subunit blocker
TETRACAINEApproved
Sodium channel alpha subunit blocker
Pain
TETRACAINE HYDROCHLORIDEPhase III
Sodium channel alpha subunit blocker
TOCAINIDEApproved
Sodium channel alpha subunit blocker
cardiac arrhythmia
TOPIRAMATEApproved
Glutamate receptor ionotropic AMPA antagonist
epilepsy
ZONISAMIDEApproved
Sodium channel alpha subunit blocker
epilepsy
Related Genes
SCN3BProtein interaction100%GPKOWProtein interaction93%SLC38A1Protein interaction91%SLC38A4Protein interaction83%SCN1BProtein interaction81%SCN2BProtein interaction81%
Tissue Expression6 tissues
Bone Marrow
100%
Liver
92%
Ovary
62%
Brain
57%
Lung
38%
Heart
25%
Gene Interaction Network
Click a node to explore
SCN11ASCN3BGPKOWSLC38A1SLC38A4SCN1BSCN2B
PROTEIN STRUCTURE
Preparing viewerโ€ฆ
AlphaFoldAI-predicted ยท UniProt Q9UI33
View on AlphaFold โ†—
Constraintโ“˜
LOEUFโ“˜
0.83LoF Tolerant
pLIโ“˜
0.00Tolerant
Observed/Expected LoF0.69 [0.57โ€“0.83]
RankingsWhere SCN11A stands among ~20K protein-coding genes
  • #10,393of 20,598
    Most Researched39
  • #24of 1,025
    FDA-Approved Drug Targets59 ยท top 5%
  • #2,978of 5,498
    Most Pathogenic Variants9
  • #7,141of 17,882
    Most Constrained (LOEUF)0.83
Genes detectedSCN11A
Sources retrieved10 papers
Response timeโ€”
๐Ÿ“„ Sources
10โ–ผ
1
A 20-year Clinical and Genetic Neuromuscular Cohort Analysis in Lebanon: An International Effort.
PMID: 34602496
J Neuromuscul Dis ยท 2022
1.00
2
Erythromelalgia.
PMID: 29299961
Vasa ยท 2018
0.90
3
The Evolving Landscape of Small Fiber Neuropathy.
PMID: 39433284
Semin Neurol ยท 2025
0.80
4
Genetic Analysis of
PMID: 38999942
Int J Mol Sci ยท 2024
0.70
5
Small fibre neuropathy.
PMID: 28665811
Curr Opin Neurol ยท 2017
0.60