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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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SCO2
synthesis of cytochrome C oxidase 2
Chromosome 22 Β· 22q13.33
NCBI Gene: 9997Ensembl: ENSG00000284194.4HGNC: HGNC:10604UniProt: O43819
121PubMed Papers
22Diseases
0Drugs
49Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
mitochondrial respiratory chain complex IV assemblymitochondrial inner membranemyofibrilprotein bindingcardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1myopia 6fatal infantile encephalocardiomyopathyRare isolated myopia
✦AI Summary

SCO2 (synthesis of cytochrome C oxidase 2) functions as a copper metallochaperone essential for mitochondrial respiratory chain complex IV assembly and cellular copper homeostasis 1. The protein facilitates copper incorporation into cytochrome c oxidase subunit II (MT-CO2/COX2), working in conjunction with SCO1 to deliver copper to the Cu(A) site of this critical respiratory enzyme 1. SCO2 may also function as a thiol-disulfide oxidoreductase, regulating the redox state of cysteines in SCO1 during MT-CO2/COX2 maturation 1. Located in the mitochondrial inner membrane, SCO2 plays a crucial role in cellular energy metabolism through its involvement in electron transport chain function. Mutations in SCO2 cause mitochondrial complex IV deficiency, leading to fatal infantile cardioencephalomyopathy with cytochrome c oxidase deficiency 2. This severe genetic disorder demonstrates the critical importance of proper copper metabolism in mitochondrial function. SCO2 deficiency has also been associated with hereditary motor neuropathies, expanding the clinical spectrum of SCO2-related disorders 3. Therapeutic approaches using protein replacement therapy have shown promise, with recombinant SCO2 protein successfully restoring partial COX activity in patient-derived fibroblasts 2. Additionally, novel mRNA-based delivery platforms targeting SCO2 deficiency represent emerging treatment strategies for this devastating mitochondrial disorder 2.

Sources cited
1
SCO2 functions as copper metallochaperone and facilitates copper incorporation with SCO1, plus potential thiol-disulfide oxidoreductase activity
PMID: 32506322
2
SCO2 mutations cause fatal infantile cardioencephalomyopathy with COX deficiency and protein replacement therapy shows therapeutic promise
PMID: 36678915
3
SCO2 is involved in hereditary motor neuropathies pathogenesis
PMID: 32796276
⚠Limited data available β€” This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜22
cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1Open Targets
0.82Strong
myopia 6Open Targets
0.79Strong
fatal infantile encephalocardiomyopathyOpen Targets
0.65Moderate
Rare isolated myopiaOpen Targets
0.64Moderate
mitochondrial DNA depletion syndrome 1Open Targets
0.57Moderate
mitochondrial diseaseOpen Targets
0.53Moderate
neurodegenerative diseaseOpen Targets
0.50Moderate
mitochondrial neurogastrointestinal encephalomyopathyOpen Targets
0.50Moderate
genetic disorderOpen Targets
0.47Moderate
myopiaOpen Targets
0.37Weak
Leigh syndromeOpen Targets
0.37Weak
Charcot-Marie-Tooth disease type 4Open Targets
0.37Weak
SeizureOpen Targets
0.34Weak
Severe global developmental delayOpen Targets
0.34Weak
Tip-toe gaitOpen Targets
0.34Weak
multiple sclerosisOpen Targets
0.28Weak
dilated cardiomyopathyOpen Targets
0.27Weak
Alagille syndromeOpen Targets
0.27Weak
Alagille syndrome due to a JAG1 point mutationOpen Targets
0.27Weak
chronic lymphocytic leukemiaOpen Targets
0.21Weak
Mitochondrial complex IV deficiency, nuclear type 2UniProt
Myopia 6UniProt
Pathogenic Variants49
NM_005138.3(SCO2):c.227_230del (p.Leu76fs)Pathogenic
Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 76
NM_005138.3(SCO2):c.418G>A (p.Glu140Lys)Pathogenic
Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1|Myopia 6|not provided|Severe global developmental delay;Seizure|Tip-toe gait|SCO2-related disorder|Myopia 6;Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1
β˜…β˜…β˜†β˜†2026β†’ Residue 140
NM_005138.3(SCO2):c.225G>A (p.Trp75Ter)Pathogenic
Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 75
NM_005138.3(SCO2):c.157C>T (p.Gln53Ter)Pathogenic
Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1|Myopia 6|not provided|Myopia 6;Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1
β˜…β˜…β˜†β˜†2025β†’ Residue 53
NM_005138.3(SCO2):c.16_17insAGCATGCAGCAGTGACTCA (p.Arg6fs)Pathogenic
Primary dilated cardiomyopathy|not provided|Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1|Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1;Myopia 6
β˜…β˜…β˜†β˜†2025β†’ Residue 6
NM_005138.3(SCO2):c.45_46del (p.Gln16fs)Pathogenic
not provided|Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1
β˜…β˜…β˜†β˜†2025β†’ Residue 16
NM_005138.3(SCO2):c.577G>A (p.Gly193Ser)Pathogenic
not provided|Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1;Myopia 6|Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1
β˜…β˜…β˜†β˜†2025β†’ Residue 193
NM_005138.3(SCO2):c.327_328del (p.His109fs)Pathogenic
not provided|Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1
β˜…β˜…β˜†β˜†2025β†’ Residue 109
NM_005138.3(SCO2):c.2T>C (p.Met1Thr)Likely pathogenic
Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1|Alagille syndrome due to a JAG1 point mutation
β˜…β˜…β˜†β˜†2025β†’ Residue 1
NM_005138.3(SCO2):c.268C>T (p.Arg90Ter)Pathogenic
Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1|not provided|Myopia 6
β˜…β˜…β˜†β˜†2025β†’ Residue 90
NM_005138.3(SCO2):c.544C>T (p.Gln182Ter)Pathogenic
not provided|Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1
β˜…β˜…β˜†β˜†2024β†’ Residue 182
NM_005138.3(SCO2):c.401_402del (p.Pro134fs)Pathogenic
not provided|Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1|Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1;Myopia 6
β˜…β˜…β˜†β˜†2024β†’ Residue 134
NM_005138.3(SCO2):c.135_136del (p.Glu45fs)Pathogenic
Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 45
NM_005138.3(SCO2):c.364C>T (p.Gln122Ter)Pathogenic
not provided|Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1
β˜…β˜…β˜†β˜†2024β†’ Residue 122
NM_005138.3(SCO2):c.481C>T (p.Gln161Ter)Pathogenic
not provided|Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1
β˜…β˜…β˜†β˜†2023β†’ Residue 161
NM_005138.3(SCO2):c.750_756dup (p.Ser253fs)Likely pathogenic
not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 253
NM_005138.3(SCO2):c.358del (p.Arg120fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 120
NM_005138.3(SCO2):c.169_191dup (p.Thr64_Gly65insPheGluProGlyCysTer)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 64
NM_005138.3(SCO2):c.250_251del (p.Arg84fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 84
NM_005138.3(SCO2):c.738_750dup (p.Ser251delinsGlyTer)Likely pathogenic
Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1;Myopia 6
β˜…β˜†β˜†β˜†2024β†’ Residue 251
View on ClinVar β†—
Related Genes
TP53Protein interaction98%UQCRFS1Protein interaction98%BCS1LProtein interaction98%COX10Protein interaction98%COX11Protein interaction98%COX15Protein interaction98%
Tissue Expression4 tissues
Bone Marrow
0%
Ovary
0%
Lung
0%
Liver
0%
Gene Interaction Network
Click a node to explore
SCO2TP53UQCRFS1BCS1LCOX10COX11COX15
PROTEIN STRUCTURE
Preparing viewer…
PDB2RLI Β· NMR
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.76LoF Tolerant
pLIβ“˜
0.01Tolerant
Observed/Expected LoF0.94 [0.48–1.76]
RankingsWhere SCO2 stands among ~20K protein-coding genes
  • #3,898of 20,598
    Most Researched121 Β· top quartile
  • #1,351of 5,498
    Most Pathogenic Variants49 Β· top quartile
  • #16,386of 17,882
    Most Constrained (LOEUF)1.76
Genes detectedSCO2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Copper metabolism in cell death and autophagy.
PMID: 37055935
Autophagy Β· 2023
1.00
2
A 20-year Clinical and Genetic Neuromuscular Cohort Analysis in Lebanon: An International Effort.
PMID: 34602496
J Neuromuscul Dis Β· 2022
0.90
3
The molecular mechanisms of copper metabolism and its roles in human diseases.
PMID: 32506322
Pflugers Arch Β· 2020
0.80
4
Hereditary motor neuropathies.
PMID: 32796276
Curr Opin Neurol Β· 2020
0.70
5
Protein Transduction Domain-Mediated Delivery of Recombinant Proteins and In Vitro Transcribed mRNAs for Protein Replacement Therapy of Human Severe Genetic Mitochondrial Disorders: The Case of Sco2 Deficiency.
PMID: 36678915
Pharmaceutics Β· 2023
0.60