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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SDC3
syndecan 3
Chromosome 1 · 1p35.2
NCBI Gene: 9672Ensembl: ENSG00000162512.17HGNC: HGNC:10660UniProt: O75056
71PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
extracellular matrixidentical protein bindingprotein bindingmembraneCOVID-19dengue diseaseinsomniaHypercholesterolemia
✦AI Summary

SDC3 (syndecan-3) is a cell surface heparan sulfate proteoglycan with diverse regulatory functions across multiple biological processes. In the immune system, SDC3 positively regulates macrophage pro-inflammatory functions, with genetic ablation leading to impaired cytokine secretion, reduced phagocytosis, and compromised T cell effector responses 1. The protein is expressed by tumor-associated macrophages and Kupffer cells in fibrotic liver tissue, suggesting roles in inflammation and tissue remodeling 2. In neural development, SDC3 controls the timing of cerebellar granule cell precursor differentiation by regulating the transition from cell cycle exit to initial differentiation stages 3. Clinically, SDC3 has emerged as a biomarker in several diseases: reduced expression is associated with apparent treatment-resistant hypertension 4, while increased expression correlates with childhood obesity parameters including BMI, insulin levels, and HOMA-IR index 5. Additionally, SDC3 serves as a prognostic biomarker in osteosarcoma, with higher expression linked to poor outcomes 6. These findings establish SDC3 as a multifunctional regulator involved in immune responses, neural development, and metabolic disorders, with potential therapeutic implications across diverse pathological conditions 7.

Sources cited
1
SDC3 positively regulates macrophage pro-inflammatory functions and genetic ablation impairs cytokine secretion and phagocytosis
PMID: 40192763
2
SDC3 is expressed by Kupffer cells in fibrotic liver regions
PMID: 35726350
3
SDC3 regulates timing of cerebellar granule cell precursor transition from cell cycle exit to differentiation
PMID: 36898477
4
Reduced SDC3 expression is associated with apparent treatment-resistant hypertension
PMID: 36447229
5
Increased SDC3 expression correlates with childhood obesity parameters including BMI and insulin levels
PMID: 40948554
6
SDC3 serves as a prognostic biomarker in osteosarcoma
PMID: 36086752
7
SDC3 has roles in inflammatory disorders and angiogenesis
PMID: 31998313
Disease Associationsⓘ20
COVID-19Open Targets
0.54Moderate
dengue diseaseOpen Targets
0.46Moderate
insomniaOpen Targets
0.35Weak
HypercholesterolemiaOpen Targets
0.32Weak
spermatoceleOpen Targets
0.31Weak
congestive heart failureOpen Targets
0.09Suggestive
gestational diabetesOpen Targets
0.09Suggestive
breast cancerOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.08Suggestive
obesityOpen Targets
0.08Suggestive
ovarian cancerOpen Targets
0.08Suggestive
goutOpen Targets
0.08Suggestive
renal cell carcinomaOpen Targets
0.08Suggestive
metabolic syndromeOpen Targets
0.07Suggestive
temporomandibular joint disorderOpen Targets
0.07Suggestive
Alzheimer diseaseOpen Targets
0.07Suggestive
hypotrichosis simplexOpen Targets
0.06Suggestive
Alopecia universalisOpen Targets
0.06Suggestive
Alopecia-intellectual disability syndromeOpen Targets
0.06Suggestive
rheumatoid arthritisOpen Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SRCProtein interaction100%FGF2Protein interaction99%FN1Protein interaction97%CTTNProtein interaction91%HSPG2Protein interaction89%GDNFProtein interaction87%
Tissue Expression6 tissues
Brain
100%
Heart
81%
Lung
38%
Liver
24%
Ovary
19%
Bone Marrow
9%
Gene Interaction Network
Click a node to explore
SDC3SRCFGF2FN1CTTNHSPG2GDNF
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt O75056
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.73LoF Tolerant
pLIⓘ
0.27Tolerant
Observed/Expected LoF0.42 [0.25–0.73]
RankingsWhere SDC3 stands among ~20K protein-coding genes
  • #6,675of 20,598
    Most Researched71
  • #5,672of 17,882
    Most Constrained (LOEUF)0.73
Genes detectedSDC3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Spatial transcriptomics identifies enriched gene expression and cell types in human liver fibrosis.
PMID: 35726350
Hepatol Commun · 2022
1.00
2
Syndecan-3 positively regulates the pro-inflammatory function of macrophages.
PMID: 40192763
Cell Mol Life Sci · 2025
0.90
3
Syndecan-3 in Inflammation and Angiogenesis.
PMID: 31998313
Front Immunol · 2019
0.80
4
Leukocyte-epithelial interactions.
PMID: 14519390
Curr Opin Cell Biol · 2003
0.70
5
Two novel predictive biomarkers for osteosarcoma and glycolysis pathways: A profiling study on HS2ST1 and SDC3.
PMID: 36086752
Medicine (Baltimore) · 2022
0.60