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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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SDHAF1
succinate dehydrogenase complex assembly factor 1
Chromosome 19 Β· 19q13.12
NCBI Gene: 644096Ensembl: ENSG00000205138.4HGNC: HGNC:33867UniProt: A6NFY7
16PubMed Papers
21Diseases
0Drugs
7Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingmitochondrial respiratory chain complex II assemblymitochondrionmitochondrial matrixmitochondrial complex II deficiency, nuclear type 1mitochondrial complex 2 deficiency, nuclear type 2mitochondrial diseaseneurodegenerative disease
✦AI Summary

SDHAF1 (succinate dehydrogenase complex assembly factor 1) is an essential mitochondrial protein that mediates assembly of succinate dehydrogenase (SDH/Complex II), a critical enzyme linking the tricarboxylic acid cycle and the electron transport chain 1. SDHAF1 specifically promotes maturation of the iron-sulfur protein subunit SDHB by transiently binding to aromatic peptides of SDHB through its C-terminal arginine-rich region and recruiting the iron-sulfur transfer complex (HSC20-HSPA9-ISCU) via its N-terminal LYR motif 2. This assembly function protects SDHB from oxidative damage 3, with SDHAF1 acting cooperatively with SDHAF3 3. Functionally, SDH couples succinate oxidation to fumarate with ubiquinone reduction, ultimately enabling ATP generation through oxidative phosphorylation 1. Pathogenic SDHAF1 mutations cause rare mitochondrial complex II deficiency presenting as infantile leukoencephalopathy with elevated serum and white matter succinate/lactate levels 2. Disease-causing variants impair SDHB binding or iron-sulfur cluster transfer, triggering SDHB degradation 2. Clinical manifestations include Leigh syndrome, cardiomyopathy, developmental delay, and neurological dysfunction 4. Riboflavin treatment ameliorates neurologic symptoms by enhancing SDHA flavinylation and reducing succinate and HIF-1Ξ±/2Ξ± levels 2. SDHAF1 mutations represent one of four genes (alongside SDHA, SDHB, SDHD) causing isolated complex II deficiency 5.

Sources cited
1
SDHAF1 is required for SDH assembly; SDH catalyzes succinate to fumarate conversion coupled to ubiquinone reduction and ATP generation
PMID: 40685935
2
SDHAF1 binds SDHB and recruits iron-sulfur transfer complex for Fe-S cluster incorporation; pathogenic mutations impair this process and cause infantile leukoencephalopathy; riboflavin treatment ameliorates symptoms
PMID: 26749241
3
SDHAF1 (Sdh6) mediates SDHB maturation, protects it from oxidative damage, and acts with SDHAF3
PMID: 24954417
4
SDHAF1 mutations cause complex II deficiency with phenotypes including leukoencephalopathy, cardiomyopathy, developmental delay, and neurological involvement
PMID: 23322652
5
SDHAF1 is an assembly factor required for complex II biogenesis; mutations in SDHAF1 are documented in patients with isolated mitochondrial complex II deficiency
PMID: 33162331
6
SDH deficiency plays a role in non-neoplastic diseases including Leigh syndrome and neurometabolic disorders
PMID: 40685935
Disease Associationsβ“˜21
mitochondrial complex II deficiency, nuclear type 1Open Targets
0.75Strong
mitochondrial complex 2 deficiency, nuclear type 2Open Targets
0.74Strong
mitochondrial diseaseOpen Targets
0.55Moderate
neurodegenerative diseaseOpen Targets
0.40Moderate
genetic disorderOpen Targets
0.19Weak
lysosomal storage diseaseOpen Targets
0.14Weak
Spastic paraparesisOpen Targets
0.01Suggestive
LeukoencephalopathyOpen Targets
0.01Suggestive
infectionOpen Targets
0.01Suggestive
strokeOpen Targets
0.01Suggestive
Leigh syndromeOpen Targets
0.01Suggestive
cardiomyopathyOpen Targets
0.00Suggestive
ParagangliomaOpen Targets
0.00Suggestive
pheochromocytomaOpen Targets
0.00Suggestive
colorectal carcinomaOpen Targets
0.00Suggestive
myocarditisOpen Targets
0.00Suggestive
obesityOpen Targets
0.00Suggestive
gastrointestinal stromal tumorOpen Targets
0.00Suggestive
neoplasmOpen Targets
0.00Suggestive
dementiaOpen Targets
0.00Suggestive
Mitochondrial complex II deficiency, nuclear type 2UniProt
Pathogenic Variants7
NM_001042631.3(SDHAF1):c.156C>A (p.Tyr52Ter)Pathogenic
not provided|Mitochondrial complex II deficiency, nuclear type 1|Mitochondrial complex 2 deficiency, nuclear type 2
β˜…β˜…β˜†β˜†2024β†’ Residue 52
NM_001042631.3(SDHAF1):c.95T>A (p.Val32Glu)Likely pathogenic
Mitochondrial complex 2 deficiency, nuclear type 2
β˜…β˜†β˜†β˜†2023β†’ Residue 32
NM_001042631.3(SDHAF1):c.169G>C (p.Gly57Arg)Pathogenic
Mitochondrial complex 2 deficiency, nuclear type 2
β˜…β˜†β˜†β˜†2023β†’ Residue 57
NM_001042631.3(SDHAF1):c.28C>T (p.Gln10Ter)Pathogenic
Mitochondrial complex 2 deficiency, nuclear type 2
β˜…β˜†β˜†β˜†2022β†’ Residue 10
NM_001042631.3(SDHAF1):c.22C>T (p.Gln8Ter)Likely pathogenic
not provided|Mitochondrial complex 2 deficiency, nuclear type 2
β˜…β˜†β˜†β˜†2017β†’ Residue 8
NM_001042631.3(SDHAF1):c.170G>A (p.Gly57Glu)Pathogenic
Mitochondrial complex 2 deficiency, nuclear type 2
β˜†β˜†β˜†β˜†2021β†’ Residue 57
NM_001042631.3(SDHAF1):c.164G>C (p.Arg55Pro)Pathogenic
Mitochondrial complex 2 deficiency, nuclear type 2
β˜†β˜†β˜†β˜†2009β†’ Residue 55
View on ClinVar β†—
Related Genes
SDHAProtein interaction100%SDHBProtein interaction100%SDHCProtein interaction100%SDHDProtein interaction100%SDHAF2Protein interaction100%SDHAF3Protein interaction100%
Tissue Expression6 tissues
Liver
100%
Brain
56%
Ovary
52%
Lung
48%
Heart
32%
Bone Marrow
14%
Gene Interaction Network
Click a node to explore
SDHAF1SDHASDHBSDHCSDHDSDHAF2SDHAF3
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt A6NFY7
View on AlphaFold β†—
RankingsWhere SDHAF1 stands among ~20K protein-coding genes
  • #15,379of 20,598
    Most Researched16
  • #3,273of 5,498
    Most Pathogenic Variants7
Genes detectedSDHAF1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Metabolic Effects of Succinate Dehydrogenase Loss in Cancer.
PMID: 40685935
J Cell Physiol Β· 2025
1.00
2
The genetic basis of isolated mitochondrial complex II deficiency.
PMID: 33162331
Mol Genet Metab Β· 2020
0.90
3
The LYR factors SDHAF1 and SDHAF3 mediate maturation of the iron-sulfur subunit of succinate dehydrogenase.
PMID: 24954417
Cell Metab Β· 2014
0.80
4
The role of complex II in disease.
PMID: 23174333
Biochim Biophys Acta Β· 2013
0.70
5
Complex II deficiency--a case report and review of the literature.
PMID: 23322652
Am J Med Genet A Β· 2013
0.60