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17 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SF3A3
splicing factor 3a subunit 3
Chromosome 1 · 1p34.3
NCBI Gene: 10946Ensembl: ENSG00000183431.13HGNC: HGNC:10767UniProt: B4DW90
187PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
U2 snRNPcatalytic step 2 spliceosomeprotein bindingRNA bindingneurodegenerative diseasedengue diseasecoronary artery diseaseurinary system disease
✦AI Summary

SF3A3 (splicing factor 3a subunit 3) is an essential component of the U2 snRNP spliceosome complex that mediates pre-mRNA splicing by promoting branch-site adenosine selection during the first step of splicing 1234. Within the SF3A subcomplex, SF3A3 contributes to 17S U2 snRNP assembly and subsequent formation of pre-spliceosome 'E' and pre-catalytic spliceosome 'A' complexes 12. The protein's expression is translationally regulated through an eIF3D-dependent mechanism involving an RNA stem-loop structure, particularly under MYC hyperactivation 5. SF3A3 demonstrates significant oncogenic properties across multiple cancer types. In endometrial cancer, it drives tumor progression by regulating alternative splicing of c-FOS, resulting in increased anti-apoptotic signaling and cisplatin resistance 6. Similarly, SF3A3 promotes breast cancer aggressiveness by facilitating metabolic reprogramming and stem-like properties 5, while in colorectal cancer it exhibits anti-apoptotic effects 7. Elevated SF3A3 expression correlates with poor prognosis in multiple cancer types 68. Therapeutically, phenethyl isothiocyanate (PEITC) has been identified as a direct SF3A3 inhibitor showing promise in preclinical studies 67.

Sources cited
1
SF3A3 is component of U2 snRNP complex mediating pre-mRNA splicing and branch-site selection
PMID: 10882114
2
SF3A3 contributes to 17S U2 snRNP assembly and spliceosome complex formation
PMID: 11533230
3
SF3A3 promotes selection of pre-mRNA branch-site adenosine during splicing
PMID: 32494006
4
SF3A3 participates in spliceosome assembly and branch site recognition
PMID: 34822310
5
SF3A3 expression is translationally regulated via eIF3D-dependent mechanism and promotes breast cancer progression
PMID: 33662273
6
SF3A3 drives endometrial cancer progression through c-FOS alternative splicing regulation and PEITC inhibits SF3A3
PMID: 40598817
7
SF3A3 acts as oncogene in colorectal cancer with anti-apoptotic effects and PEITC shows therapeutic potential
PMID: 40301637
8
SF3A3 identified as putative breast cancer RNA-binding protein with oncogenic features
PMID: 35453681
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.50Moderate
dengue diseaseOpen Targets
0.37Weak
coronary artery diseaseOpen Targets
0.37Weak
urinary system diseaseOpen Targets
0.33Weak
heart diseaseOpen Targets
0.26Weak
colorectal cancerOpen Targets
0.25Weak
androgenetic alopeciaOpen Targets
0.23Weak
coronary atherosclerosisOpen Targets
0.20Weak
colorectal adenomaOpen Targets
0.19Weak
myocardial infarctionOpen Targets
0.17Weak
hypertensionOpen Targets
0.15Weak
Varicose veinsOpen Targets
0.14Weak
Hashimoto's thyroiditisOpen Targets
0.12Weak
angina pectorisOpen Targets
0.12Weak
thyroiditisOpen Targets
0.12Weak
hepatocellular carcinomaOpen Targets
0.09Suggestive
neoplasmOpen Targets
0.09Suggestive
coronary artery bypassOpen Targets
0.09Suggestive
breast cancerOpen Targets
0.08Suggestive
non-small cell lung carcinomaOpen Targets
0.08Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
DHX15Protein interaction100%IKProtein interaction100%MFAP1Protein interaction100%SFSWAPProtein interaction100%SNRPAProtein interaction100%SNRPCProtein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
97%
Ovary
63%
Lung
63%
Liver
45%
Heart
43%
Gene Interaction Network
Click a node to explore
SF3A3DHX15IKMFAP1SFSWAPSNRPASNRPC
PROTEIN STRUCTURE
Preparing viewer…
PDB7Q4O · 2.20 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.26Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.15 [0.09–0.26]
RankingsWhere SF3A3 stands among ~20K protein-coding genes
  • #2,298of 20,598
    Most Researched187 · top quartile
  • #839of 17,882
    Most Constrained (LOEUF)0.26 · top 5%
Genes detectedSF3A3
Sources retrieved17 papers
Response time—
📄 Sources
17▼
1
SF3A3 Drives Tumorigenesis in Endometrial Cancer by Enhancing c-FOS Expression and Represents a Potential Therapeutic Target.
PMID: 40598817
Adv Sci (Weinh) · 2025
1.00
2
Inhibition of splicing factors SF3A3 and SRSF5 contributes to As
PMID: 37356608
Arch Biochem Biophys · 2023
0.90
3
Structural basis for the interaction between the first SURP domain of the SF3A1 subunit in U2 snRNP and the human splicing factor SF1.
PMID: 36173164
Protein Sci · 2022
0.80
4
Trans-ancestry transcriptome-wide association and functional studies to uncover novel susceptibility genes and therapeutic targets for colorectal cancer.
PMID: 40301637
NPJ Precis Oncol · 2025
0.70
5
Extended DNA-binding interfaces beyond the canonical SAP domain contribute to the function of replication stress regulator SDE2 at DNA replication forks.
PMID: 35850305
J Biol Chem · 2022
0.65