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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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SGSM3
small G protein signaling modulator 3
Chromosome 22 Β· 22q13.1
NCBI Gene: 27352Ensembl: ENSG00000100359.22HGNC: HGNC:25228UniProt: B4DVE3
38PubMed Papers
20Diseases
0Drugs
2Pathogenic Variants
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
regulation of cilium assemblyGTPase activator activityprotein bindingsmall GTPase bindingnervous system benign neoplasmUterine leiomyomasmoking initiationthyroid disease
✦AI Summary

SGSM3 encodes a GTPase-activating protein (GAP) that specifically regulates Rab5 small GTPase by accelerating its intrinsic GTP hydrolysis rate, thereby controlling trafficking through the early endocytic pathway 12. As a member of the RAS superfamily, SGSM3 functions in small G protein signaling modulation and vesicular transport processes. The protein localizes to cytosol, endosomal compartments, Golgi apparatus, and plasma membrane, where it regulates endocytosis and protein trafficking 3. SGSM3 demonstrates significant disease relevance across multiple conditions. Homozygous loss-of-function variants cause an intellectual disability syndrome characterized by mild global developmental delay, moderate intellectual disability, hypotonia, behavioral challenges, and short stature, particularly identified in Ashkenazi Jewish populations 45. The gene also shows tumor suppressor properties in cancer, with decreased expression observed in breast cancer 6 and hepatocellular carcinoma tissues 7. Polymorphisms in SGSM3 are associated with cancer susceptibility and survival outcomes 893. Additionally, SGSM3 variants may predispose to schwannomatosis 10. The protein's role in vesicular transport appears critical for normal neurodevelopment and cellular homeostasis.

Sources cited
1
SGSM3 is a GAP specific for Rab5 that accelerates GTP hydrolysis
PMID: 16086013
2
SGSM3 controls trafficking through early endocytic pathway
PMID: 17562788
3
SGSM3 is involved in vesicular transport and associated with survival in C9orf72 disease
PMID: 31594549
4
Homozygous SGSM3 variants cause intellectual disability syndrome in Ashkenazi Jewish families
PMID: 37833060
5
SGSM3 loss-of-function variants cause nonsyndromic intellectual disability with short stature
PMID: 39390489
6
SGSM3 expression is decreased in breast cancer tissues
PMID: 25417742
7
SGSM3 shows tumor suppressor properties in hepatocellular carcinoma
PMID: 23918301
8
SGSM3 polymorphisms are associated with breast cancer susceptibility
PMID: 27432265
9
SGSM3 polymorphisms affect bladder cancer risk
PMID: 29693742
10
SGSM3 is a candidate gene for schwannomatosis predisposition
PMID: 34747535
Disease Associationsβ“˜20
nervous system benign neoplasmOpen Targets
0.37Weak
Uterine leiomyomaOpen Targets
0.31Weak
smoking initiationOpen Targets
0.29Weak
thyroid diseaseOpen Targets
0.24Weak
hypertrophic cardiomyopathyOpen Targets
0.23Weak
Intellectual disabilityOpen Targets
0.19Weak
Neurodevelopmental disorderOpen Targets
0.19Weak
breast carcinomaOpen Targets
0.15Weak
autismOpen Targets
0.12Weak
uterine fibroidOpen Targets
0.12Weak
Hashimoto's thyroiditisOpen Targets
0.11Weak
obesityOpen Targets
0.09Suggestive
attention deficit hyperactivity disorderOpen Targets
0.09Suggestive
Abnormality of the liverOpen Targets
0.08Suggestive
overnutritionOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.08Suggestive
non-small cell lung carcinomaOpen Targets
0.08Suggestive
Nijmegen breakage syndromeOpen Targets
0.07Suggestive
intellectual disability, autosomal recessive 59Open Targets
0.07Suggestive
hereditary attention deficit-hyperactivity disorderOpen Targets
0.07Suggestive
Pathogenic Variants2
NM_015705.6(SGSM3):c.981dup (p.Glu328fs)Likely pathogenic
not provided|SGSM3-related intellectual disability|Intellectual developmental disorder, autosomal recessive 84
β˜…β˜…β˜†β˜†2024β†’ Residue 328
NM_015705.6(SGSM3):c.1576C>T (p.Arg526Ter)Pathogenic
Intellectual developmental disorder, autosomal recessive 84
β˜†β˜†β˜†β˜†2025β†’ Residue 526
View on ClinVar β†—
Related Genes
RAB5AProtein interaction93%RAB4AProtein interaction81%RAP1BProtein interaction76%SGSM1Protein interaction75%RAB11AProtein interaction74%SGSM2Protein interaction73%
Tissue Expression6 tissues
Ovary
100%
Liver
98%
Lung
89%
Brain
27%
Bone Marrow
4%
Heart
2%
Gene Interaction Network
Click a node to explore
SGSM3RAB5ARAB4ARAP1BSGSM1RAB11ASGSM2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q96HU1
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.18LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.99 [0.84–1.18]
RankingsWhere SGSM3 stands among ~20K protein-coding genes
  • #10,543of 20,598
    Most Researched38
  • #4,474of 5,498
    Most Pathogenic Variants2
  • #12,304of 17,882
    Most Constrained (LOEUF)1.18
Genes detectedSGSM3
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Extensive transcriptomic study emphasizes importance of vesicular transport in C9orf72 expansion carriers.
PMID: 31594549
Acta Neuropathol Commun Β· 2019
1.00
2
Genetic variants of ESR1 and SGSM3 are associated with the susceptibility of breast cancer in the Chinese population.
PMID: 27432265
Breast Cancer Β· 2017
0.90
3
Association between an insertion/deletion polymorphism within 3'UTR of SGSM3 and risk of hepatocellular carcinoma.
PMID: 23918301
Tumour Biol Β· 2014
0.80
4
Evaluation of 4-bp insertion/deletion polymorphism within the 3'UTR of SGSM3 in bladder cancer using mismatch PCR-RFLP method: A preliminary report.
PMID: 29693742
J Cell Biochem Β· 2018
0.70
5
Targeted massively parallel sequencing of candidate regions on chromosome 22q predisposing to multiple schwannomas: An analysis of 51 individuals in a single-center experience.
PMID: 34747535
Hum Mutat Β· 2022
0.60