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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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SLAMF6
SLAM family member 6
Chromosome 1 · 1q23.2-q23.3
NCBI Gene: 114836Ensembl: ENSG00000162739.15HGNC: HGNC:21392UniProt: B4E1U5
61PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Receptor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingidentical protein bindingpositive regulation of interleukin-17 productionpositive regulation of natural killer cell mediated cytotoxicityGraves diseaseatopic eczemaovarian dysfunctionbilirubin metabolism disease
✦AI Summary

SLAMF6 is a self-ligand receptor of the SLAM family that modulates immune cell activation through homo- or heterotypic cell-cell interactions 1. In T cells, SLAMF6 functions as an inhibitory receptor triggered by cis homotypic interactions at the T cell surface, suppressing T cell activation independently of tumor cell expression 2. SLAMF6 marks stem-like or progenitor-exhausted T (Tpex) cells that retain proliferative capacity and self-renewal potential, distinguishing them from terminally exhausted T cells 34. High SLAMF6 expression correlates with better prognosis in melanoma and breast cancer, associated with enhanced effector function and TCF7 expression 4. SLAMF6 also promotes Th17 differentiation through recruitment of RORC to the IL-17 promoter 1 and maintains intestinal Th17 cells as reservoirs for pathogenic effector T cell generation during autoimmunity 1. Clinically, aberrant SLAMF6 expression on AML cells serves as an immune escape mechanism in 60% of cases, and blocking SLAMF6 dimerization with antibodies restores T cell killing 5. SLAMF6 thus represents a dual-function molecule: marking therapeutic T cell populations while also enabling tumor immune evasion, positioning it as a promising immunotherapy target.

Sources cited
1
SLAMF6 marks stem-like intestinal Th17 cells that traffic to maintain homeostasis and can generate pathogenic effector T cells during CNS autoimmunity
PMID: 34875227
2
SLAMF6 is highly expressed on TCF-1+ PD-1+ stem-like CD8+ T cells in tumor-draining lymph nodes that self-renew and maintain high TCR affinity
PMID: 41299179
3
Aberrant SLAMF6 expression on AML cells (60% of cases) protects from T cell recognition; SLAMF6 antibody targeting enables T cell activation and AML cell killing
PMID: 41044242
4
SLAMF6+ memory-like T cell subset exists in chronic LCMV infection with enhanced accumulation capacity but remains largely quiescent
PMID: 35216666
5
SLAMF6 functions exclusively as a T cell inhibitory receptor triggered by cis homotypic interactions; anti-SLAMF6 mAbs augment T cell activation and tumor control
PMID: 41673151
6
SLAMF6 expression is upregulated in intrahepatic immune cells during chronic HBV infection, particularly in HBeAg-negative hepatitis with exhaustion phenotype
PMID: 35218813
7
Engineered T cells maintain a pool of TCF1+ SLAMF6+ stem-like T cells while enhancing dendritic cell interactions for improved anti-tumor immunity
PMID: 40858102
8
High SLAMF6 expression on CD8+ T cells correlates with better prognosis in melanoma and breast cancer, associated with TCF7 expression and effector function
PMID: 38287061
Disease Associationsⓘ20
Graves diseaseOpen Targets
0.38Weak
atopic eczemaOpen Targets
0.32Weak
ovarian dysfunctionOpen Targets
0.31Weak
bilirubin metabolism diseaseOpen Targets
0.30Weak
rheumatoid arthritisOpen Targets
0.28Weak
polyarteritis nodosaOpen Targets
0.28Weak
urethral syndromeOpen Targets
0.26Weak
dermatitisOpen Targets
0.19Weak
Eczematoid dermatitisOpen Targets
0.16Weak
neoplasmOpen Targets
0.11Weak
melanomaOpen Targets
0.09Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
acute myeloid leukemiaOpen Targets
0.07Suggestive
breast cancerOpen Targets
0.07Suggestive
colorectal carcinomaOpen Targets
0.07Suggestive
isolated agammaglobulinemiaOpen Targets
0.07Suggestive
Townes-Brocks syndromeOpen Targets
0.06Suggestive
Autosomal recessive hyper-IgE syndromeOpen Targets
0.05Suggestive
Autosomal recessive hyper-IgE syndrome due to TYK2 deficiencyOpen Targets
0.05Suggestive
immunodeficiency 35Open Targets
0.05Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
CD8AProtein interaction95%SH2D1BProtein interaction94%CD48Protein interaction84%PVRProtein interaction84%NCR2Protein interaction84%NCR1Protein interaction84%
Tissue Expression6 tissues
Lung
100%
Bone Marrow
47%
Liver
28%
Heart
16%
Brain
6%
Ovary
4%
Gene Interaction Network
Click a node to explore
SLAMF6CD8ASH2D1BCD48PVRNCR2NCR1
PROTEIN STRUCTURE
Preparing viewer…
PDB2IF7 · 3.00 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.76LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.53 [0.37–0.76]
RankingsWhere SLAMF6 stands among ~20K protein-coding genes
  • #7,610of 20,598
    Most Researched61
  • #6,042of 17,882
    Most Constrained (LOEUF)0.76
Genes detectedSLAMF6
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Stem-like intestinal Th17 cells give rise to pathogenic effector T cells during autoimmunity.
PMID: 34875227
Cell · 2021
1.00
2
Inhibitory PD-1 axis maintains high-avidity stem-like CD8
PMID: 41299179
Nature · 2026
0.90
3
Aberrant expression of SLAMF6 constitutes a targetable immune escape mechanism in acute myeloid leukemia.
PMID: 41044242
Nat Cancer · 2025
0.80
4
Tfh-cell-derived interleukin 21 sustains effector CD8
PMID: 35216666
Immunity · 2022
0.70
5
SLAMF6 as a drug-targetable suppressor of T cell immunity against cancer.
PMID: 41673151
Nature · 2026
0.60