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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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SLC12A1
solute carrier family 12 member 1
Chromosome 15 Β· 15q21.1
NCBI Gene: 6557Ensembl: ENSG00000074803.21HGNC: HGNC:10910UniProt: A0A8I5KSK6
78PubMed Papers
21Diseases
5Drugs
132Pathogenic Variants
FUNCTIONAL ROLE
Transporter
RESEARCH IMPACT
Variant-Rich
CLINICAL
FDA Approved TargetOMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
apical plasma membraneextracellular exosomeprotein serine/threonine kinase bindingcell volume homeostasisBartter disease type 1nephrotic syndromehypertensioncongestive heart failure
✦AI Summary

SLC12A1 encodes the sodium-potassium-chloride cotransporter 2 (NKCC2), a secondary active transporter that mediates electroneutral movement of Na+, K+, and Cl- in a 1:1:2 ratio across cell membranes 1. Expressed on the apical membrane of thick ascending limb epithelial cells, SLC12A1 is the primary molecular target of loop diuretics like furosemide and bumetanide, and plays an essential role in transepithelial NaCl reabsorption and urinary concentration/volume regulation 1. The transporter also substitutes NH4+ for K+, enabling ammonium transport crucial for maintaining ammonium homeostasis, particularly during metabolic acidosis. Loss-of-function SLC12A1 mutations cause Bartter syndrome type 1, an autosomal recessive renal tubular disorder characterized by hypokalemic, hypochloremic metabolic alkalosis, hypercalciuria, and nephrocalcinosis 2, 3. Neonatal presentations include polyuria, failure to thrive, and intrauterine growth retardation 2. Beyond kidney physiology, SLC12A1 overexpression is implicated in hepatocellular carcinoma pathogenesis through the WNK1/ERK5 pathway, with SLC12A1 antagonists showing therapeutic potential in preclinical xenograft models 4. Pathogenic variants span from common exonic mutations to rare deep intronic variants affecting splicing 5.

Sources cited
1
SLC12A1 encodes NKCC2 that mediates electroneutral Na+, K+, Cl- cotransport in 1:1:2 ratio; expressed on apical membrane of thick ascending limb; target of loop diuretics
PMID: 24097229
2
SLC12A1 mutations cause Bartter syndrome type 1 presenting with intrauterine growth retardation, premature delivery, failure to thrive, polyuria, and metabolic alkalosis
PMID: 35358470
3
SLC12A1 mutations associated with hypokalemic metabolic alkalosis, hypercalciuria, nephrocalcinosis, and hyperparathyroidism
PMID: 28095294
4
SLC12A1 overexpression in hepatocellular carcinoma regulates WNK1/ERK5 pathway; SLC12A1 antagonist bumetanide inhibits tumor growth in xenografts
PMID: 27447551
5
Deep intronic SLC12A1 variants causing Bartter syndrome type 1 are detected by whole genome sequencing and affect splicing
PMID: 40992552
Disease Associationsβ“˜21
Bartter disease type 1Open Targets
0.79Strong
nephrotic syndromeOpen Targets
0.62Moderate
hypertensionOpen Targets
0.61Moderate
congestive heart failureOpen Targets
0.61Moderate
Bartter syndromeOpen Targets
0.61Moderate
cirrhosis of liverOpen Targets
0.60Moderate
kidney diseaseOpen Targets
0.59Moderate
heart failureOpen Targets
0.57Moderate
cardiovascular diseaseOpen Targets
0.54Moderate
genetic disorderOpen Targets
0.48Moderate
pulmonary edemaOpen Targets
0.46Moderate
urinary system diseaseOpen Targets
0.46Moderate
nephrolithiasisOpen Targets
0.42Moderate
edemaOpen Targets
0.38Weak
strokeOpen Targets
0.37Weak
myocardial infarctionOpen Targets
0.37Weak
nephrocalcinosisOpen Targets
0.36Weak
preeclampsiaOpen Targets
0.29Weak
bronchiolitisOpen Targets
0.28Weak
autismOpen Targets
0.28Weak
Bartter syndrome 1, antenatalUniProt
Pathogenic Variants132
NM_000338.3(SLC12A1):c.3164+1G>APathogenic
not provided|Bartter disease type 1
β˜…β˜…β˜†β˜†2026
NM_000338.3(SLC12A1):c.1687dup (p.Glu563fs)Pathogenic
not provided|Bartter disease type 1
β˜…β˜…β˜†β˜†2025β†’ Residue 563
NM_000338.3(SLC12A1):c.1833del (p.Phe611fs)Pathogenic
Bartter disease type 1|not provided|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 611
NM_000338.3(SLC12A1):c.1432G>A (p.Gly478Arg)Pathogenic
Bartter disease type 1|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 478
NM_000338.3(SLC12A1):c.2716C>T (p.Gln906Ter)Pathogenic
not provided|Bartter disease type 1
β˜…β˜…β˜†β˜†2025β†’ Residue 906
NM_000338.3(SLC12A1):c.1087+2T>CPathogenic
not provided|Bartter disease type 1
β˜…β˜…β˜†β˜†2025
NM_000338.3(SLC12A1):c.2402+1G>ALikely pathogenic
not provided|Bartter disease type 1|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025
NM_000338.3(SLC12A1):c.382C>T (p.Arg128Ter)Pathogenic
Bartter disease type 1|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 128
NM_000338.3(SLC12A1):c.1493C>T (p.Ala498Val)Likely pathogenic
not provided|Bartter syndrome|Bartter disease type 1
β˜…β˜…β˜†β˜†2025β†’ Residue 498
NM_000338.3(SLC12A1):c.1103A>G (p.Glu368Gly)Pathogenic
not provided|Inborn genetic diseases|Bartter disease type 1
β˜…β˜…β˜†β˜†2025β†’ Residue 368
NM_000338.3(SLC12A1):c.1424G>A (p.Cys475Tyr)Likely pathogenic
Nephrolithiasis;Nephrocalcinosis|Bartter disease type 1
β˜…β˜…β˜†β˜†2025β†’ Residue 475
NM_000338.3(SLC12A1):c.769G>A (p.Gly257Ser)Pathogenic
Nephrolithiasis;Nephrocalcinosis|not provided|Bartter disease type 1
β˜…β˜…β˜†β˜†2025β†’ Residue 257
NM_000338.3(SLC12A1):c.2978del (p.Glu993fs)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 993
NM_000338.3(SLC12A1):c.1316G>A (p.Arg439Gln)Pathogenic
Bartter disease type 1|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 439
NM_000338.3(SLC12A1):c.975+1G>ALikely pathogenic
not provided|Bartter syndrome|Bartter disease type 1
β˜…β˜…β˜†β˜†2024
NM_000338.3(SLC12A1):c.2281C>T (p.Arg761Ter)Pathogenic
not provided|Bartter syndrome|Bartter disease type 1
β˜…β˜…β˜†β˜†2024β†’ Residue 761
NM_000338.3(SLC12A1):c.975+2T>CLikely pathogenic
not provided|Bartter disease type 1
β˜…β˜…β˜†β˜†2024
NM_000338.3(SLC12A1):c.2869dup (p.Ile957fs)Pathogenic
not provided|Bartter disease type 1
β˜…β˜…β˜†β˜†2024β†’ Residue 957
NM_000338.3(SLC12A1):c.2805dup (p.Trp936fs)Pathogenic
Bartter disease type 1|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 936
NM_000338.3(SLC12A1):c.2498_2499del (p.Arg833fs)Pathogenic
Bartter disease type 1|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 833
View on ClinVar β†—
Drug Targets5
BUMETANIDEApproved
Sodium-(potassium)-chloride cotransporter 2 inhibitor
nephrotic syndrome
ETHACRYNATE SODIUMApproved
Sodium-(potassium)-chloride cotransporter 2 inhibitor
hypertension
ETHACRYNIC ACIDApproved
Sodium-(potassium)-chloride cotransporter 2 inhibitor
cardiovascular disease
FUROSEMIDEApproved
Sodium-(potassium)-chloride cotransporter 2 inhibitor
nephrotic syndrome
TORSEMIDEApproved
Sodium-(potassium)-chloride cotransporter 2 inhibitor
congestive heart failure
Related Genes
BSNDProtein interaction100%CASRProtein interaction95%CLCNKBProtein interaction95%UMODProtein interaction92%SCNN1GProtein interaction91%WNK4Protein interaction91%
Tissue Expression6 tissues
Brain
100%
Ovary
81%
Bone Marrow
59%
Liver
41%
Lung
20%
Heart
0%
Gene Interaction Network
Click a node to explore
SLC12A1BSNDCASRCLCNKBUMODSCNN1GWNK4
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q13621
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.97LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.79 [0.64–0.97]
RankingsWhere SLC12A1 stands among ~20K protein-coding genes
  • #6,109of 20,598
    Most Researched78
  • #309of 1,025
    FDA-Approved Drug Targets5
  • #590of 5,498
    Most Pathogenic Variants132 Β· top quartile
  • #9,216of 17,882
    Most Constrained (LOEUF)0.97
Genes detectedSLC12A1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Physiology and pathophysiology of SLC12A1/2 transporters.
PMID: 24097229
Pflugers Arch Β· 2014
1.00
2
What Does Uromodulin Do?
PMID: 32839194
Clin J Am Soc Nephrol Β· 2020
0.90
3
Treatment with an SLC12A1 antagonist inhibits tumorigenesis in a subset of hepatocellular carcinomas.
PMID: 27447551
Oncotarget Β· 2016
0.80
4
Novel SLC12A1 mutations cause Bartter syndrome in two patients with different prognoses.
PMID: 35358470
Clin Chim Acta Β· 2022
0.70
5
Natural Products in Renal-Associated Drug Discovery.
PMID: 37627594
Antioxidants (Basel) Β· 2023
0.60