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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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SLC19A2
solute carrier family 19 member 2
Chromosome 1 Β· 1q24.2
NCBI Gene: 10560Ensembl: ENSG00000117479.16HGNC: HGNC:10938UniProt: A0A024R8Y5
83PubMed Papers
21Diseases
0Drugs
60Pathogenic Variants
FUNCTIONAL ROLE
Transporter
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingthiamine transmembrane transporter activitythiamine transportpyridoxine transportthiamine-responsive megaloblastic anemia syndromeblood coagulation diseaseheart diseasedeep vein thrombosis
✦AI Summary

SLC19A2 is a high-affinity thiamine transporter that mediates H(+)-dependent uptake of thiamine and pyridoxine, essential B vitamins serving as enzymatic cofactors in energy metabolism, protein and nucleic acid biosynthesis, and neurotransmitter production 1. The protein contains 12 transmembrane domains and is expressed throughout the gastrointestinal tract, with highest expression in liver, playing a role in intestinal thiamine absorption 2. Structurally, SLC19A2 translocates diverse substrates including thiamine, pyridoxine, and various drugs like metformin and fedratinib through outward- and inward-facing conformations 1. Beyond nutrient transport, SLC19A2 forms a heterodimer with the ion channel Tmem63b to induce phospholipid scrambling upon calcium stimulation, suggesting additional cellular regulatory functions 3. Clinically, mutations in SLC19A2 cause thiamine-responsive megaloblastic anemia syndrome, characterized by anemia, diabetes, and visual disturbances that respond dramatically to thiamine supplementation, though advanced neurological damage may be irreversible 45. The transporter represents a critical nutrient acquisition system whose dysfunction results in severe neurometabolic disease 1.

Sources cited
1
SLC19A2 is a high-affinity thiamine transporter mediating H(+)-dependent pyridoxine transport; cryo-EM structures reveal substrate and drug recognition mechanisms
PMID: 39738067
2
SLC19A2 is expressed throughout the gastrointestinal tract with highest expression in liver and plays a role in intestinal thiamine absorption
PMID: 11997118
3
SLC19A2 encodes a protein with 12 transmembrane domains and conserved sequence motifs including N-glycosylation and phosphorylation sites
PMID: 11386850
4
SLC19A2 forms a heterodimer with Tmem63b ion channel to induce phospholipid scrambling upon calcium stimulation
PMID: 39217145
5
SLC19A2 mutations cause thiamine-responsive megaloblastic anemia with anemia, diabetes, and visual disturbances responsive to thiamine supplementation
PMID: 38759983
6
SLC19A2 variants are associated with thiamine-responsive megaloblastic anemia syndrome; database contains 48 disease-associated variants
PMID: 28432734
Disease Associationsβ“˜21
thiamine-responsive megaloblastic anemia syndromeOpen Targets
0.83Strong
blood coagulation diseaseOpen Targets
0.38Weak
heart diseaseOpen Targets
0.36Weak
deep vein thrombosisOpen Targets
0.34Weak
sensorineural hearing lossOpen Targets
0.34Weak
Abnormality of the earOpen Targets
0.34Weak
ear malformationOpen Targets
0.34Weak
Sensorineural hearing impairmentOpen Targets
0.34Weak
ThrombophlebitisOpen Targets
0.33Weak
PhlebitisOpen Targets
0.33Weak
esophageal diseaseOpen Targets
0.32Weak
pulmonary embolismOpen Targets
0.31Weak
Pulmonary InfarctionOpen Targets
0.31Weak
Varicose veinsOpen Targets
0.30Weak
chronic venous insufficiencyOpen Targets
0.30Weak
thrombophiliaOpen Targets
0.30Weak
cardiovascular diseaseOpen Targets
0.27Weak
Abnormality of limbsOpen Targets
0.25Weak
gastroesophageal reflux diseaseOpen Targets
0.24Weak
skin lipomaOpen Targets
0.24Weak
Thiamine-responsive megaloblastic anemia syndromeUniProt
Pathogenic Variants60
NM_006996.3(SLC19A2):c.515G>A (p.Gly172Asp)Pathogenic
Megaloblastic anemia, thiamine-responsive, with diabetes mellitus and sensorineural deafness|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 172
NM_006996.3(SLC19A2):c.242dup (p.Tyr81Ter)Pathogenic
Megaloblastic anemia, thiamine-responsive, with diabetes mellitus and sensorineural deafness|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 81
NM_006996.3(SLC19A2):c.428C>T (p.Ser143Phe)Pathogenic
Megaloblastic anemia, thiamine-responsive, with diabetes mellitus and sensorineural deafness|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 143
NM_006996.3(SLC19A2):c.1001G>A (p.Gly334Asp)Pathogenic
not provided|Megaloblastic anemia, thiamine-responsive, with diabetes mellitus and sensorineural deafness
β˜…β˜…β˜†β˜†2025β†’ Residue 334
NM_006996.3(SLC19A2):c.1223+1G>APathogenic
not provided|Megaloblastic anemia, thiamine-responsive, with diabetes mellitus and sensorineural deafness|Lung cancer
β˜…β˜…β˜†β˜†2025
NM_006996.3(SLC19A2):c.205G>T (p.Val69Phe)Likely pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 69
NM_006996.3(SLC19A2):c.759dup (p.Glu254Ter)Pathogenic
not provided|Megaloblastic anemia, thiamine-responsive, with diabetes mellitus and sensorineural deafness
β˜…β˜…β˜†β˜†2025β†’ Residue 254
NM_006996.3(SLC19A2):c.196G>T (p.Glu66Ter)Pathogenic
not provided|Sensorineural hearing loss disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 66
NM_006996.3(SLC19A2):c.484C>T (p.Arg162Ter)Pathogenic
Megaloblastic anemia, thiamine-responsive, with diabetes mellitus and sensorineural deafness|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 162
NM_006996.3(SLC19A2):c.749G>A (p.Trp250Ter)Pathogenic
not provided|Megaloblastic anemia, thiamine-responsive, with diabetes mellitus and sensorineural deafness
β˜…β˜…β˜†β˜†2025β†’ Residue 250
NM_006996.3(SLC19A2):c.429_432del (p.Tyr144fs)Pathogenic
not provided|Megaloblastic anemia, thiamine-responsive, with diabetes mellitus and sensorineural deafness
β˜…β˜…β˜†β˜†2024β†’ Residue 144
NM_006996.3(SLC19A2):c.1189A>T (p.Arg397Ter)Pathogenic
not provided|Megaloblastic anemia, thiamine-responsive, with diabetes mellitus and sensorineural deafness
β˜…β˜…β˜†β˜†2024β†’ Residue 397
NM_006996.3(SLC19A2):c.807+2T>GLikely pathogenic
not provided|Megaloblastic anemia, thiamine-responsive, with diabetes mellitus and sensorineural deafness
β˜…β˜…β˜†β˜†2023
NM_006996.3(SLC19A2):c.314G>A (p.Gly105Glu)Pathogenic
Megaloblastic anemia, thiamine-responsive, with diabetes mellitus and sensorineural deafness|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 105
NM_006996.3(SLC19A2):c.697C>T (p.Gln233Ter)Pathogenic
Megaloblastic anemia, thiamine-responsive, with diabetes mellitus and sensorineural deafness|Ear malformation
β˜…β˜…β˜†β˜†2021β†’ Residue 233
NM_006996.3(SLC19A2):c.1134T>G (p.Tyr378Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2026β†’ Residue 378
NM_006996.3(SLC19A2):c.1201_1202del (p.Met401fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 401
NM_006996.3(SLC19A2):c.1031-1G>APathogenic
Possible mitochondrial disorder - nuclear genes
β˜…β˜†β˜†β˜†2025
NM_006996.3(SLC19A2):c.958T>C (p.Trp320Arg)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 320
NM_006996.3(SLC19A2):c.750G>A (p.Trp250Ter)Pathogenic
Megaloblastic anemia, thiamine-responsive, with diabetes mellitus and sensorineural deafness|not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 250
View on ClinVar β†—
Related Genes
TSPAN1Protein interaction75%SLC19A3Protein interaction67%TPK1Protein interaction53%SPMIP7Shared pathway20%CBY3Shared pathway20%ARRDC5Shared pathway20%
Tissue Expression6 tissues
Liver
100%
Lung
92%
Ovary
77%
Heart
69%
Bone Marrow
52%
Brain
21%
Gene Interaction Network
Click a node to explore
SLC19A2TSPAN1SLC19A3TPK1SPMIP7CBY3ARRDC5
PROTEIN STRUCTURE
Preparing viewer…
PDB8Z7Z Β· 3.23 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.85LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.62 [0.46–0.85]
RankingsWhere SLC19A2 stands among ~20K protein-coding genes
  • #5,758of 20,598
    Most Researched83
  • #1,169of 5,498
    Most Pathogenic Variants60 Β· top quartile
  • #7,408of 17,882
    Most Constrained (LOEUF)0.85
Genes detectedSLC19A2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Substrate transport and drug interaction of human thiamine transporters SLC19A2/A3.
PMID: 39738067
Nat Commun Β· 2024
1.00
2
Monogenic diabetes syndromes: Locus-specific databases for AlstrΓΆm, Wolfram, and Thiamine-responsive megaloblastic anemia.
PMID: 28432734
Hum Mutat Β· 2017
0.90
3
Slc19a2: cloning and characterization of the murine thiamin transporter cDNA and genomic sequence, the orthologue of the human TRMA gene.
PMID: 11386850
Mol Genet Metab Β· 2001
0.80
4
Deciphering hub genes and immune landscapes related to neutrophil extracellular traps in rheumatoid arthritis: insights from integrated bioinformatics analyses and experiments.
PMID: 39845946
Front Immunol Β· 2024
0.70
5
Thiamine-responsive megaloblastic anaemia.
PMID: 38759983
Natl Med J India Β· 2023
0.60