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GeneE
26 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
SLC22A5
solute carrier family 22 member 5
Chromosome 5 Β· 5q31.1
NCBI Gene: 6584Ensembl: ENSG00000197375.15HGNC: HGNC:10969UniProt: O76082
200PubMed Papers
21Diseases
0Drugs
286Pathogenic Variants
FUNCTIONAL ROLE
Transporter
RESEARCH IMPACT
TrendingVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
quaternary ammonium group transmembrane transporter activityplasma membranebasal plasma membranetransmembrane transporter activitySystemic primary carnitine deficiencysystemic primary carnitine deficiency diseaseDecreased circulating carnitine concentrationgenetic disorder
✦AI Summary

SLC22A5 encodes OCTN2 (organic cation transporter novel family member 2), a sodium-dependent membrane transporter essential for carnitine uptake across cell membranes 1. OCTN2 functions primarily in carnitine transport, a critical process for transferring long-chain fatty acids across the inner mitochondrial membrane for Ξ²-oxidation 1. The transporter localizes to the plasma membrane, including apical and brush border membranes, where it mediates high-affinity carnitine accumulation by cells and renal reabsorption 1. Loss-of-function mutations in SLC22A5 cause systemic primary carnitine deficiency (CTD), characterized by reduced intracellular carnitine accumulation, increased urinary carnitine loss, and low serum carnitine levels 1. This disorder presents clinically with hypoketotic hypoglycemia, hepatic encephalopathy, skeletal and cardiac myopathy, or sudden cardiac death, typically triggered by fasting or catabolic states 1. Among 358 subjects evaluated, 140 showed reduced carnitine transport, with SLC22A5 sequencing identifying causative variants in 84% of alleles 2. A major mechanism of disease involves impaired plasma membrane localization of OCTN2 protein, accounting for approximately 62% of loss-of-function variants 3. Oral carnitine supplementation at pharmacological doses effectively treats primary carnitine deficiency 1, and carnitine therapy mitigates hypoxia and chr5 kidney disease progression by maintaining carnitine homeostasis 4.

Sources cited
1
OCTN2 mediates high-affinity carnitine transport; SLC22A5 mutations cause primary carnitine deficiency with clinical features including hypoketotic hypoglycemia, hepatic encephalopathy, myopathy, and sudden cardiac death; oral carnitine treatment is effective
PMID: 26828774
2
Primary carnitine deficiency caused by SLC22A5 defects; 140/358 subjects showed reduced carnitine transport; SLC22A5 sequencing identified causative variants in 84% of alleles
PMID: 28841266
3
70% of OCTN2 variants significantly reduce carnitine transport; 62% of variants impair plasma membrane localization as major loss-of-function mechanism
PMID: 36343260
4
OCTN2 maintains carnitine homeostasis; carnitine supplementation combats hypoxia and chronic kidney disease progression
PMID: 35108516
5
OCTN2 encoded by SLC22A5 is a ubiquitously expressed membrane transport protein with regulated expression controlled by transcription factors
PMID: 39201429
6
OCTN2 (SLC22A5) is a member of the SLC22 transporter family; mutations in OCTN2 cause inherited metabolic diseases
PMID: 29309257
Disease Associationsβ“˜21
Systemic primary carnitine deficiencyOpen Targets
0.87Strong
systemic primary carnitine deficiency diseaseOpen Targets
0.80Strong
Decreased circulating carnitine concentrationOpen Targets
0.53Moderate
genetic disorderOpen Targets
0.52Moderate
asthmaOpen Targets
0.51Moderate
inflammatory bowel diseaseOpen Targets
0.41Moderate
chronic rhinosinusitisOpen Targets
0.39Weak
Crohn's diseaseOpen Targets
0.38Weak
brain aneurysmOpen Targets
0.33Weak
Acute rhabdomyolysisOpen Targets
0.33Weak
Congenital myasthenic syndromesOpen Targets
0.33Weak
Presynaptic congenital myasthenic syndromesOpen Targets
0.33Weak
Abruptio PlacentaeOpen Targets
0.33Weak
neurodegenerative diseaseOpen Targets
0.32Weak
chronic rhinosinusitis with nasal polypsOpen Targets
0.31Weak
atopic eczemaOpen Targets
0.30Weak
Nasal Cavity PolypOpen Targets
0.29Weak
hypertensionOpen Targets
0.28Weak
dermatitisOpen Targets
0.28Weak
essential hypertensionOpen Targets
0.27Weak
Systemic primary carnitine deficiencyUniProt
Pathogenic Variants286
NM_003060.4(SLC22A5):c.797C>T (p.Pro266Leu)Pathogenic
Renal carnitine transport defect|Decreased circulating carnitine concentration|Carnitine deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 266
NM_003060.4(SLC22A5):c.845G>A (p.Arg282Gln)Pathogenic
Renal carnitine transport defect|not provided|Inborn genetic diseases|SLC22A5-related disorder|Carnitine deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 282
NM_003060.4(SLC22A5):c.-149G>APathogenic
Renal carnitine transport defect|not provided|SLC22A5-related disorder|Inborn genetic diseases
β˜…β˜…β˜†β˜†2026
NM_003060.4(SLC22A5):c.825-1G>CPathogenic
Renal carnitine transport defect|not provided|Carnitine deficiency
β˜…β˜…β˜†β˜†2026
NM_003060.4(SLC22A5):c.1400C>G (p.Ser467Cys)Pathogenic
Renal carnitine transport defect|not provided|Carnitine deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 467
NM_003060.4(SLC22A5):c.136C>T (p.Pro46Ser)Pathogenic
Renal carnitine transport defect|not provided|See cases|Carnitine deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 46
NM_003060.4(SLC22A5):c.844C>T (p.Arg282Ter)Pathogenic
Renal carnitine transport defect|not provided|SLC22A5-related disorder|Inborn genetic diseases|Carnitine deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 282
NM_003060.4(SLC22A5):c.791C>G (p.Thr264Arg)Pathogenic
Renal carnitine transport defect|not provided|SLC22A5-related disorder|Carnitine deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 264
NM_003060.4(SLC22A5):c.680G>A (p.Arg227His)Pathogenic
Renal carnitine transport defect|not provided|Carnitine deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 227
NM_003060.4(SLC22A5):c.865C>T (p.Arg289Ter)Pathogenic
Renal carnitine transport defect|Carnitine deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 289
NM_003060.4(SLC22A5):c.760C>T (p.Arg254Ter)Pathogenic
Renal carnitine transport defect|not provided|not specified|Carnitine deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 254
NM_003060.4(SLC22A5):c.1586+1G>TPathogenic
Renal carnitine transport defect|Papillary renal cell carcinoma type 1
β˜…β˜…β˜†β˜†2026
NM_003060.4(SLC22A5):c.695C>T (p.Thr232Met)Pathogenic
Renal carnitine transport defect|not provided|Carnitine deficiency|Acute rhabdomyolysis
β˜…β˜…β˜†β˜†2026β†’ Residue 232
NM_003060.4(SLC22A5):c.1175TGC[2] (p.Leu394del)Pathogenic
Renal carnitine transport defect|not provided|Carnitine deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 394
NM_003060.4(SLC22A5):c.825G>A (p.Trp275Ter)Pathogenic
Renal carnitine transport defect|not provided|Carnitine deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 275
NM_003060.4(SLC22A5):c.1304del (p.Gly435fs)Pathogenic
Renal carnitine transport defect
β˜…β˜…β˜†β˜†2026β†’ Residue 435
NM_003060.4(SLC22A5):c.1412G>A (p.Arg471His)Pathogenic
Renal carnitine transport defect|not provided|Carnitine deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 471
NM_003060.4(SLC22A5):c.64TTC[1] (p.Phe23del)Pathogenic
Renal carnitine transport defect|not provided|Carnitine deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 23
NM_003060.4(SLC22A5):c.1319C>T (p.Thr440Met)Pathogenic
Renal carnitine transport defect|not provided|Inborn genetic diseases|Decreased circulating carnitine concentration|SLC22A5-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 440
NM_003060.4(SLC22A5):c.51C>G (p.Phe17Leu)Pathogenic
Renal carnitine transport defect|not provided|Carnitine deficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 17
View on ClinVar β†—
Related Genes

No related genes found for this gene.

Tissue Expression6 tissues
Liver
100%
Ovary
88%
Heart
59%
Lung
56%
Brain
36%
Bone Marrow
21%
Gene Interaction Network

No interaction data available for this gene.

PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt O76082
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.96LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.73 [0.56–0.96]
RankingsWhere SLC22A5 stands among ~20K protein-coding genes
  • #2,116of 20,598
    Most Researched200 Β· top quartile
  • #215of 5,498
    Most Pathogenic Variants286 Β· top 5%
  • #9,092of 17,882
    Most Constrained (LOEUF)0.96
Genes detectedSLC22A5
Sources retrieved26 papers
Response timeβ€”
πŸ“„ Sources
26β–Ό
1
Carnitine transport and fatty acid oxidation.
PMID: 26828774
Biochim Biophys Acta Β· 2016
1.00
2
Functional and molecular studies in primary carnitine deficiency.
PMID: 28841266
Hum Mutat Β· 2017
0.90
3
A 20-year Clinical and Genetic Neuromuscular Cohort Analysis in Lebanon: An International Effort.
PMID: 34602496
J Neuromuscul Dis Β· 2022
0.80
4
The Human OCTN Sub-Family: Gene and Protein Structure, Expression, and Regulation.
PMID: 39201429
Int J Mol Sci Β· 2024
0.70
5
Inflammation and Organic Cation Transporters Novel (OCTNs).
PMID: 38672410
Biomolecules Β· 2024
0.68