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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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SLC4A3
solute carrier family 4 member 3
Chromosome 2 Β· 2q35
NCBI Gene: 6508Ensembl: ENSG00000114923.18HGNC: HGNC:11029UniProt: P48751
37PubMed Papers
21Diseases
0Drugs
2Pathogenic Variants
FUNCTIONAL ROLE
Transporter
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
bicarbonate transportpH reductionprotein bindingplasma membraneFamilial short QT syndromeshort QT syndrome 7short QT syndromeulcerative colitis
✦AI Summary

SLC4A3 encodes cardiac anion exchanger 3 (AE3), a sodium-independent transporter mediating electroneutral chloride-bicarbonate exchange across the cell membrane 1. This function is critical for regulating intracellular pH and modulating cardiac action potential duration 1. Mechanistically, SLC4A3 dysfunction leads to intracellular alkalinization, which impairs L-type calcium channel current and enhances sodium-calcium exchanger activity, ultimately shortening action potential duration 2. Both loss-of-function mutations (p.Arg370Cys, p.Lys531Thr) and gain-of-function variants (p.R1016G) have been identified 23. SLC4A3 is now recognized as a major genetic cause of short QT syndrome (SQTS), accounting for approximately 15% of genotyped cases 4. Pathogenic variants are associated with abbreviated QT intervals and ventricular arrhythmias, including delayed afterdepolarizations that trigger sudden cardiac death 25. Class Ia antiarrhythmics (quinidine, sotalol) effectively prolong action potential duration and reduce arrhythmia events in SLC4A3-associated SQTS 2. Beyond cardiac function, SLC4A3 mutations cause progressive retinal atrophy in dogs, suggesting potential retinal involvement in humans 6. The gene's clinical significance justifies genome sequencing approaches in sudden cardiac death cases 7.

Sources cited
1
SLC4A3 mediates chloride-bicarbonate exchange and regulates intracellular pH and cardiac action potential
PMID: 29167417
2
SLC4A3 mutations cause loss-of-function leading to intracellular alkalinization, decreased L-type calcium current, and shortened APD via enhanced Na/Ca exchange, with DADs provoked by alkalinization
PMID: 41780556
3
Novel SLC4A3 p.R1016G variant shows gain-of-function and causes familial SQTS with sudden cardiac death
PMID: 40439641
4
SLC4A3 nonsynonymous variants are the most common genetic cause of SQTS, present in ~15% of SQTS patients, with zebrafish validation showing loss-of-function mechanisms
PMID: 36806574
5
Novel SLC4A3 variant p.Gly386Val associated with familial SQTS and sudden death
PMID: 41039816
6
SLC4A3 frameshift mutation causes progressive retinal atrophy in dogs, suggesting importance for retinal function
PMID: 21738669
7
SLC4A3 identified as emerging therapeutic target in SQTS, justifying genome sequencing in sudden cardiac death cases
PMID: 29697308
Disease Associationsβ“˜21
Familial short QT syndromeOpen Targets
0.44Moderate
short QT syndrome 7Open Targets
0.43Moderate
short QT syndromeOpen Targets
0.23Weak
ulcerative colitisOpen Targets
0.20Weak
genetic disorderOpen Targets
0.19Weak
ventricular fibrillationOpen Targets
0.19Weak
cardiac arrestOpen Targets
0.18Weak
Abnormality of the cardiovascular systemOpen Targets
0.16Weak
Abnormality of the skeletal systemOpen Targets
0.15Weak
kidney diseaseOpen Targets
0.13Weak
sialolithiasisOpen Targets
0.13Weak
cholelithiasisOpen Targets
0.13Weak
central nervous system cancerOpen Targets
0.13Weak
hyperaldosteronismOpen Targets
0.12Weak
cardiomyopathyOpen Targets
0.12Weak
cardiac arrhythmiaOpen Targets
0.12Weak
ovarian neoplasmOpen Targets
0.11Weak
retinitis pigmentosaOpen Targets
0.08Suggestive
Cone rod dystrophyOpen Targets
0.07Suggestive
Autosomal dominant optic atrophy, classic typeOpen Targets
0.07Suggestive
Short QT syndrome 7UniProt
Pathogenic Variants2
NM_005070.4(SLC4A3):c.1027C>T (p.Arg343Cys)Likely pathogenic
Short QT syndrome 7
β˜…β˜†β˜†β˜†2024β†’ Residue 343
NM_005070.4(SLC4A3):c.1028G>A (p.Arg343His)Pathogenic
Short QT syndrome 7
β˜†β˜†β˜†β˜†2023β†’ Residue 343
View on ClinVar β†—
Related Genes
SLC4A9Shared pathway56%SLC4A1Shared pathway44%SLC4A8Shared pathway38%SLC4A4Shared pathway38%SLC4A5Shared pathway36%SLC4A2Shared pathway33%
Tissue Expression6 tissues
Heart
100%
Ovary
63%
Brain
3%
Bone Marrow
1%
Lung
0%
Liver
0%
Gene Interaction Network
Click a node to explore
SLC4A3SLC4A9SLC4A1SLC4A8SLC4A4SLC4A5SLC4A2
PROTEIN STRUCTURE
Preparing viewer…
PDB8Y85 Β· 2.73 Γ… Β· EM
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.56Moderately Constrained
pLIβ“˜
0.01Tolerant
Observed/Expected LoF0.44 [0.34–0.56]
RankingsWhere SLC4A3 stands among ~20K protein-coding genes
  • #10,693of 20,598
    Most Researched37
  • #4,480of 5,498
    Most Pathogenic Variants2
  • #3,624of 17,882
    Most Constrained (LOEUF)0.56 Β· top quartile
Genes detectedSLC4A3
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
SLC4A3-related short QT syndrome assessed in human induced pluripotent stem cell-derived cardiomyocytes: mechanisms of ventricular arrhythmia and sudden cardiac death.
PMID: 41780556
Eur Heart J Β· 2026
1.00
2
Pseudomyogenic Hemangioendothelioma.
PMID: 31130564
J Nippon Med Sch Β· 2019
0.90
3
A Gain-of -Function SLC4A3 Mutation Causes Short-QT Syndrome: From Molecular Analysis to Novel Diagnostic Testing.
PMID: 40439641
JACC Clin Electrophysiol Β· 2025
0.80
4
Boric acid increases the expression levels of human anion exchanger genes SLC4A2 and SLC4A3.
PMID: 22576912
Genet Mol Res Β· 2012
0.70
5
"Short" also matters.
PMID: 37517862
Heart Rhythm Β· 2023
0.60