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GeneE
3 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
SLX1A
structure-specific endonuclease subunit SLX1A
Chromosome 16 Β· 16p11.2
NCBI Gene: 548593Ensembl: ENSG00000132207.20HGNC: HGNC:20922UniProt: Q9BQ83
22PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
DNA RepairHomologous Recombination
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingcrossover junction DNA endonuclease activity5'-flap endonuclease activitydouble-strand break repair via homologous recombinationbreast cancerisolated asymptomatic elevation of creatine phosphokinaseFRAXF syndromemosaic variegated aneuploidy syndrome 4
✦AI Summary

SLX1A (structure-specific endonuclease subunit SLX1A) is a catalytic component of the SLX1-SLX4 endonuclease complex that functions in DNA repair and telomere maintenance. As a structure-specific endonuclease, SLX1A catalyzes the resolution of complex DNA structures including Holliday junctions and stalled replication forks, contributing to homologous recombination repair, double-strand break processing, and telomeric D-loop disassembly 1. SLX1A mechanistically interacts with SLX4 and associates with critical DNA repair proteins including ERCC1-XPF, PLK1, and TOPBP1 to maintain DNA repair complex stability 2. The protein plays roles in both promoting and negatively regulating telomere maintenance pathways, including participation in t-circle formation and telomere lengthening mechanisms 1. Clinically, elevated SLX1A expression correlates with poor survival outcomes in prostate cancer and contributes to PARP inhibitor resistance in homologous recombination-deficient tumors 2. SLX1A knockdown restores olaparib sensitivity by disrupting SLX4-mediated DNA repair complexes, suggesting therapeutic potential 2. SLX1A mutations have been identified in colorectal neuroendocrine tumors, indicating broader cancer relevance 3. Additionally, elevated SLX1A expression in chr16 lymphocytic leukemia B-cells correlates with increased telomeric sister chr16 exchange, implicating SLX1A in alternative telomere maintenance mechanisms 1.

Sources cited
1
SLX1A is a catalytic subunit of SLX1-SLX4 endonuclease complex; elevated expression predicts poor survival; silencing SLX1 restores olaparib sensitivity by disrupting SLX4 interactions with ERCC1-XPF, PLK1, and TOPBP1
PMID: 40789692
2
SLX1A is mutated in colorectal neuroendocrine tumors and is related to telomere maintenance pathway
PMID: 32424617
3
SLX1A is involved in Holliday Junction resolution; increased SLX1A expression correlates with elevated telomeric sister chromatid exchange in chronic lymphocytic leukemia B-cells
PMID: 26970083
⚠Limited data available β€” This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜20
breast cancerOpen Targets
0.07Suggestive
isolated asymptomatic elevation of creatine phosphokinaseOpen Targets
0.06Suggestive
FRAXF syndromeOpen Targets
0.05Suggestive
mosaic variegated aneuploidy syndrome 4Open Targets
0.04Suggestive
pentosuriaOpen Targets
0.04Suggestive
prostate cancerOpen Targets
0.04Suggestive
cancerOpen Targets
0.03Suggestive
neoplasmOpen Targets
0.03Suggestive
psoriasisOpen Targets
0.02Suggestive
ulcerative colitisOpen Targets
0.02Suggestive
ankylosing spondylitisOpen Targets
0.02Suggestive
Crohn's diseaseOpen Targets
0.02Suggestive
sclerosing cholangitisOpen Targets
0.02Suggestive
Fanconi anemiaOpen Targets
0.01Suggestive
inflammatory bowel diseaseOpen Targets
0.01Suggestive
prostate adenocarcinomaOpen Targets
0.01Suggestive
urinary bladder carcinomaOpen Targets
0.00Suggestive
colorectal neuroendocrine tumorOpen Targets
0.00Suggestive
Xeroderma pigmentosum complementation group FOpen Targets
0.00Suggestive
Friedreich ataxiaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar β†—
Related Genes
ERCC4Protein interaction99%FANCAProtein interaction99%FANCD2Protein interaction99%MSH3Protein interaction99%DCLRE1AProtein interaction99%FAN1Protein interaction99%
Tissue Expression6 tissues
Liver
100%
Lung
80%
Ovary
75%
Brain
25%
Heart
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
SLX1AERCC4FANCAFANCD2MSH3DCLRE1AFAN1
PROTEIN STRUCTURE
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AlphaFoldAI-predicted Β· UniProt Q9BQ83
View on AlphaFold β†—
RankingsWhere SLX1A stands among ~20K protein-coding genes
  • #13,746of 20,598
    Most Researched22
Genes detectedSLX1A
Sources retrieved3 papers
Response timeβ€”
πŸ“„ Sources
3
1
SLX1 silencing overcomes Olaparib resistance in metastatic castration-resistant prostate cancer by disrupting SLX4-mediated DNA repair complexes.
PMID: 40789692
Cancer Biol Ther Β· 2025
1.00
2
Whole genome sequencing of colorectal neuroendocrine tumors and in-depth mutational analyses.
PMID: 32424617
Med Oncol Β· 2020
0.67
3
A high rate of telomeric sister chromatid exchange occurs in chronic lymphocytic leukaemia B-cells.
PMID: 26970083
Br J Haematol Β· 2016
0.33