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25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SNRPD3
small nuclear ribonucleoprotein D3 polypeptide
Chromosome 22 · 22q11.23
NCBI Gene: 6634Ensembl: ENSG00000100028.13HGNC: HGNC:11160UniProt: P62318
284PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingU7 snRNPU2-type spliceosomal complexenzyme bindingneurodegenerative diseaseAlzheimer diseaselysosomal storage diseasemultiple sclerosis
✦AI Summary

SNRPD3 (small nuclear ribonucleoprotein D3 polypeptide) is a core spliceosomal component essential for pre-mRNA splicing. It functions as part of the U1, U2, U4, and U5 small nuclear ribonucleoproteins, assembling into both pre-catalytic B and activated C spliceosomal complexes 12. SNRPD3 also participates in minor spliceosome-mediated splicing of U12-type introns 34 and histone pre-mRNA 3'-end processing via U7 snRNP. The protein undergoes symmetric arginine dimethylation by PRMT5, which is critical for preventing aberrant chr22 retention of transcripts and promoting mRNA nuclear export 5. SNRPD3 has emerged as a significant oncogenic factor across multiple cancers. In neuroblastoma, MYCN upregulates SNRPD3 expression to maintain alternative splicing fidelity required for tumor progression, and high SNRPD3 mRNA expression independently predicts poor patient outcomes 6. Similarly, SNRPD3 is significantly upregulated in endometrial cancer, where it promotes proliferation and metastasis by regulating SREBF1 mRNA splicing, with antisense oligonucleotide-based silencing showing therapeutic promise in patient-derived xenograft models 7. In hepatocellular carcinoma, SNRPD3 interacts with ADARp110 to stabilize CD24 mRNA, enhancing tumor immune evasion 8. A cancer-associated G96V mutation confers hypoxia resistance through altered splicing 9. Genome-wide screens identified SNRPD3 silencing as particularly effective for killing non-small cell lung cancer cells, with selective cytotoxicity compared to normal cells 10.

Sources cited
1
The protein undergoes symmetric arginine dimethylation by PRMT5, which is critical for preventing aberrant chr22 retention of transcripts and promoting mRNA nuclear export .
PMID: 41086806
2
In neuroblastoma, MYCN upregulates SNRPD3 expression to maintain alternative splicing fidelity required for tumor progression, and high SNRPD3 mRNA expression independently predicts poor patient outcomes .
PMID: 38049564
3
Similarly, SNRPD3 is significantly upregulated in endometrial cancer, where it promotes proliferation and metastasis by regulating SREBF1 mRNA splicing, with antisense oligonucleotide-based silencing showing therapeutic promise in patient-derived xenograft models .
PMID: 41924775
4
In hepatocellular carcinoma, SNRPD3 interacts with ADARp110 to stabilize CD24 mRNA, enhancing tumor immune evasion .
PMID: 39808660
5
A cancer-associated G96V mutation confers hypoxia resistance through altered splicing .
PMID: 38241813
6
Genome-wide screens identified SNRPD3 silencing as particularly effective for killing non-small cell lung cancer cells, with selective cytotoxicity compared to normal cells .
PMID: 28296343
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.50Moderate
Alzheimer diseaseOpen Targets
0.46Moderate
lysosomal storage diseaseOpen Targets
0.46Moderate
multiple sclerosisOpen Targets
0.46Moderate
Parkinson diseaseOpen Targets
0.46Moderate
dengue diseaseOpen Targets
0.37Weak
neuroblastomaOpen Targets
0.07Suggestive
Miyoshi myopathyOpen Targets
0.03Suggestive
systemic lupus erythematosusOpen Targets
0.02Suggestive
cancerOpen Targets
0.02Suggestive
retinal detachmentOpen Targets
0.02Suggestive
retinal perforationOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.02Suggestive
non-small cell lung carcinomaOpen Targets
0.02Suggestive
breast cancerOpen Targets
0.01Suggestive
triple-negative breast cancerOpen Targets
0.01Suggestive
infectionOpen Targets
0.01Suggestive
ulcerative colitisOpen Targets
0.01Suggestive
Crohn's diseaseOpen Targets
0.01Suggestive
COVID-19Open Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
XAB2Protein interaction100%RBM22Protein interaction100%PRPF19Protein interaction100%CDC40Protein interaction100%EFTUD2Protein interaction100%PRPF8Protein interaction100%
Tissue Expression6 tissues
Heart
100%
Liver
98%
Bone Marrow
87%
Brain
85%
Lung
66%
Ovary
65%
Gene Interaction Network
Click a node to explore
SNRPD3XAB2RBM22PRPF19CDC40EFTUD2PRPF8
PROTEIN STRUCTURE
Preparing viewer…
PDB3VRI · 1.60 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.20Highly Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.00 [0.00–0.20]
RankingsWhere SNRPD3 stands among ~20K protein-coding genes
  • #1,276of 20,598
    Most Researched284 · top 10%
  • #438of 17,882
    Most Constrained (LOEUF)0.20 · top 5%
Genes detectedSNRPD3
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
ADARp110 promotes hepatocellular carcinoma progression via stabilization of CD24 mRNA.
PMID: 39808660
Proc Natl Acad Sci U S A · 2025
1.00
2
Productive mRNA chromatin escape is promoted by PRMT5 activity.
PMID: 41086806
Mol Cell · 2025
0.90
3
MYCN and SNRPD3 cooperate to maintain a balance of alternative splicing events that drives neuroblastoma progression.
PMID: 38049564
Oncogene · 2024
0.80
4
Non-targeting control for MISSION shRNA library silences
PMID: 34703654
Mol Ther Nucleic Acids · 2021
0.70
5
The Orthology Clause in the Next Generation Sequencing Era: Novel Reference Genes Identified by RNA-seq in Humans Improve Normalization of Neonatal Equine Ovary RT-qPCR Data.
PMID: 26536597
PLoS One · 2015
0.68