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9 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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SPATA3
spermatogenesis associated 3
Chromosome 2 · 2q37.1
NCBI Gene: 130560Ensembl: ENSG00000173699.17HGNC: HGNC:17884UniProt: Q8NHX4
8PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
sperm flagellummotile ciliummolecular_functionazoospermiapartial chromosome Y deletionspermatogenic failure 20spermatogenic failure 72
✦AI Summary

SPATA3 (spermatogenesis-associated protein 3) is a testis-specific gene exclusively expressed in male reproductive tissue that plays essential roles in spermatogenesis and sperm development 1. The gene encodes multiple protein isoforms with distinct subcellular localizations: SPATA3-I1 and SPATA3-I2 are primarily nuclear-localized and promote cell proliferation, while SPATA3-I3 and SPATA3-I4 show cytoplasmic distribution 2. All isoforms contain a conserved PEST domain (QQPSPESTP) with variable repeats across species, suggesting functional importance in male development and spermatogenesis 1. SPATA3-I2 demonstrates specific spatiotemporal expression in round and elongated spermatids during testicular maturation (3-8 weeks postnatal), indicating critical involvement in spermatid differentiation and sperm maturation 2. Notably, SPATA3 is located in the sperm flagellum and is implicated in post-transcriptional regulation of spermatogenic genes through miRNA-mRNA interactions 3. In clinical relevance, SPATA3 is significantly downregulated in men with nonobstructive azoospermia, making it a potential biomarker for assessing spermatogenic impairment and male infertility 4. Additionally, SPATA3 is regulated by long non-coding RNAs controlling genes essential for sex determination and spermatogenesis 5.

Sources cited
1
SPATA3 is testis-specific, contains conserved PEST domain with variable repeats, and plays roles in male development and spermatogenesis
PMID: 31006096
2
SPATA3-I1 and SPATA3-I2 promote cell proliferation; SPATA3-I2 shows nuclear localization and specific expression in round and elongated spermatids aged 3-8 weeks
PMID: 40641118
3
SPATA3 is involved in ubiquitination and post-transcriptional regulation through miRNA-mRNA interactions during spermiogenesis
PMID: 36899892
4
SPATA3 is significantly downregulated in men with nonobstructive azoospermia and serves as a potential biomarker for spermatogenic impairment
PMID: 24012201
5
SPATA3 is regulated by long non-coding RNAs and associated with genes controlling sex determination and spermatogenesis
PMID: 35709667
Disease Associationsⓘ20
azoospermiaOpen Targets
0.10Weak
partial chromosome Y deletionOpen Targets
0.07Suggestive
spermatogenic failure 20Open Targets
0.07Suggestive
spermatogenic failure 72Open Targets
0.07Suggestive
spermatogenic failure 18Open Targets
0.07Suggestive
spermatogenic failure 27Open Targets
0.07Suggestive
spermatogenic failure 46Open Targets
0.07Suggestive
Male infertility due to large-headed multiflagellar polyploid spermatozoaOpen Targets
0.06Suggestive
spermatogenic failure 5Open Targets
0.06Suggestive
spermatogenic failure 86Open Targets
0.06Suggestive
spermatogenic failure 51Open Targets
0.06Suggestive
spermatogenic failure 42Open Targets
0.06Suggestive
spermatogenic failure, X-linked, 3Open Targets
0.06Suggestive
spermatogenic failure 19Open Targets
0.06Suggestive
spermatogenic failure 43Open Targets
0.06Suggestive
spermatogenic failure 45Open Targets
0.06Suggestive
spermatogenic failure 49Open Targets
0.06Suggestive
spermatogenic failure 82Open Targets
0.06Suggestive
spermatogenic failure 78Open Targets
0.06Suggestive
spermatogenic failure 40Open Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SPATS1Protein interaction73%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
14%
Liver
0%
Lung
0%
Ovary
0%
Heart
0%
Gene Interaction Network
Click a node to explore
SPATA3SPATS1
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q8NHX4
View on AlphaFold ↗
RankingsWhere SPATA3 stands among ~20K protein-coding genes
  • #17,719of 20,598
    Most Researched8
Genes detectedSPATA3
Sources retrieved9 papers
Response time—
📄 Sources
9▼
1
Characterization and molecular cloning of novel isoforms of human spermatogenesis associated gene SPATA3.
PMID: 31006096
Mol Biol Rep · 2019
1.00
2
miRNA Expression Profiles of Mouse Round Spermatids in GRTH/DDX25-Mediated Spermiogenesis: mRNA-miRNA Network Analysis.
PMID: 36899892
Cells · 2023
0.89
3
Correction to: Characterization and molecular cloning of novel isoforms of human spermatogenesis associated gene SPATA3.
PMID: 31912296
Mol Biol Rep · 2020
0.78
4
Identification of host proteins, Spata3 and Dkk2, interacting with Toxoplasma gondii micronemal protein MIC3.
PMID: 27053129
Parasitol Res · 2016
0.67
5
Molecular cloning and characterization of a novel transcript variant of Mtsarg1 gene.
PMID: 18551385
Mol Biol Rep · 2009
0.56