HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
SPINK2
serine peptidase inhibitor Kazal type 2
Chromosome 4 Β· 4q12
NCBI Gene: 6691Ensembl: ENSG00000128040.13HGNC: HGNC:11245UniProt: A0A087WTA9
22PubMed Papers
21Diseases
0Drugs
1Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
spermatid developmentacrosomal vesicleprotein bindingacrosome assemblyspermatogenic failure 29male infertility with azoospermia or oligozoospermia due to single gene mutationmigraine disorderPain
✦AI Summary

SPINK2 (serine peptidase inhibitor Kazal type 2) is a serine protease inhibitor with dual roles in reproductive and hematopoietic contexts. Classically, SPINK2 functions as a strong inhibitor of acrosin and trypsin, preventing premature protease activation during spermiogenesis and supporting male fertility 1. However, emerging evidence reveals broader biological significance. SPINK2 is expressed in hematopoietic stem and progenitor cells (HSPCs) where it serves as a signature marker distinguishing HSCs from progenitors throughout human gestation 2. In bone marrow, SPINK2 likely participates in intercellular communication within the HSC niche through temporary inhibition of target proteases PRSS2 and PRSS57 3. In acute myeloid leukemia (AML), high SPINK2 expression emerges as an independent adverse prognostic marker associated with therapy resistance and relapse risk 4. SPINK2 expression is also linked to ferroptosis regulation and immune response suppression, identifying it as a potential therapeutic target 4. Additionally, genome-wide association studies identified SPINK2 variants as specific risk alleles for migraine without aura 5. Mutations in SPINK2 cause spermatogenic failure 29, confirming its essential reproductive function 6.

Sources cited
1
SPINK2 functions as trypsin/acrosin inhibitor with critical P1 site residue Arg24 for enzyme specificity
PMID: 19422058
2
SPINK2 is part of HSC signature (RUNX1+HOXA9+MLLT3+MECOM+HLF+SPINK2+) distinguishing HSCs from progenitors throughout gestation
PMID: 35418685
3
SPINK2 is physiologically expressed in HSPCs and mobilized CD34+ cells; targets PRSS2 and PRSS57 in hematopoietic stem cell niche communication
PMID: 37378330
4
High SPINK2 protein expression is independent adverse prognostic marker in AML associated with therapy resistance; regulates ferroptosis and immune response
PMID: 37298647
5
SPINK2 variants identified as risk alleles specific for migraine without aura in genome-wide association study
PMID: 35115687
6
SPINK2 mutations contribute to azoospermia and spermatogenic failure as demonstrated in infertility case
PMID: 36965905
7
Spink2 modulates apoptotic susceptibility in retinal ganglion cells; expression increases after optic nerve damage
PMID: 24699552
Disease Associationsβ“˜21
spermatogenic failure 29Open Targets
0.47Moderate
male infertility with azoospermia or oligozoospermia due to single gene mutationOpen Targets
0.38Weak
migraine disorderOpen Targets
0.36Weak
PainOpen Targets
0.28Weak
nervous system benign neoplasmOpen Targets
0.14Weak
azoospermiaOpen Targets
0.11Weak
acute myeloid leukemiaOpen Targets
0.11Weak
risk-taking behaviourOpen Targets
0.09Suggestive
partial chromosome Y deletionOpen Targets
0.08Suggestive
spermatogenic failure 25Open Targets
0.07Suggestive
spermatogenic failure 71Open Targets
0.07Suggestive
spermatogenic failure 63Open Targets
0.07Suggestive
spermatogenic failure 57Open Targets
0.07Suggestive
spermatogenic failure 50Open Targets
0.07Suggestive
isochromosomy YpOpen Targets
0.07Suggestive
spermatogenic failure 65Open Targets
0.06Suggestive
spermatogenic failure 84Open Targets
0.06Suggestive
spermatogenic failure 93Open Targets
0.06Suggestive
spermatogenic failure 54Open Targets
0.06Suggestive
spermatogenic failure, X-linked, 3Open Targets
0.06Suggestive
Spermatogenic failure 29UniProt
Pathogenic Variants1
NM_001271718.2(SPINK2):c.206-3C>GPathogenic
Spermatogenic failure 29
β˜†β˜†β˜†β˜†2025
View on ClinVar β†—
Related Genes

No related genes found for this gene.

Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network

No interaction data available for this gene.

PROTEIN STRUCTURE
Preparing viewer…
PDB6KBR Β· 2.00 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
1.83LoF Tolerant
pLIβ“˜
0.01Tolerant
Observed/Expected LoF1.04 [0.53–1.83]
RankingsWhere SPINK2 stands among ~20K protein-coding genes
  • #13,750of 20,598
    Most Researched22
  • #5,351of 5,498
    Most Pathogenic Variants1
  • #16,698of 17,882
    Most Constrained (LOEUF)1.83
Genes detectedSPINK2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Mapping human haematopoietic stem cells from haemogenic endothelium to birth.
PMID: 35418685
Nature Β· 2022
1.00
2
Genome-wide analysis of 102,084 migraine cases identifies 123 risk loci and subtype-specific risk alleles.
PMID: 35115687
Nat Genet Β· 2022
0.90
3
Temporary serine protease inhibition and the role of SPINK2 in human bone marrow.
PMID: 37378330
iScience Β· 2023
0.80
4
Single-cell transcriptomics reveals heterogeneity and prognostic markers of myeloid precursor cells in acute myeloid leukemia.
PMID: 39737198
Front Immunol Β· 2024
0.70
5
Identification of trypsin-inhibitory site and structure determination of human SPINK2 serine proteinase inhibitor.
PMID: 19422058
Proteins Β· 2009
0.60