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4 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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STON1-GTF2A1L
STON1-GTF2A1L readthrough
Chromosome 2 · 2p16.3
NCBI Gene: 286749Ensembl: ENSG00000068781HGNC: HGNC:17003UniProt: A0A0A6YYG5
14PubMed Papers
14Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Swiss-Prot Reviewed
Leydig cell hypoplasia, type 1colorectal cancerbladder tumorlung cancer
✦AI Summary

STON1-GTF2A1L is a readthrough transcript encoding a TFIIA homolog with testis-specific expression patterns. The gene was originally identified as ALF (TFIIA-alpha/beta-like factor), a transcription factor expressed almost exclusively in testis that can stabilize TBP-TATA interactions and restore transcription in vitro 1. In functional genomics studies, STON1-GTF2A1L showed overexpression in adipose tissue of women with polycystic ovary syndrome (PCOS), particularly in the LHCGR region, suggesting involvement in hormonal regulation and metabolic dysfunction 2. Additionally, genetic variants in the STON1-GTF2A1L/LHCGR/FSHR locus (rs4482537) were significantly associated with bilateral neovascular age-related macular degeneration (AMD) in East Asian populations, achieving genome-wide significance in meta-analysis (P = 2.61 × 10⁻⁹) 3. These findings indicate STON1-GTF2A1L has pleiotropic effects spanning reproductive endocrinology and ophthalmologic disease, though the molecular mechanisms linking this transcription factor to these diverse phenotypes remain incompletely characterized.

Sources cited
1
STON1-GTF2A1L encodes ALF, a TFIIA-alpha/beta homolog expressed almost exclusively in testis that functions as a general transcription factor
PMID: 10364255
2
STON1-GTF2A1L is overexpressed in adipose tissue of PCOS patients, part of the LHCGR region alterations in gene expression
PMID: 26305227
3
STON1-GTF2A1L/LHCGR/FSHR locus (rs4482537) is significantly associated with bilateral neovascular AMD bilaterality
PMID: 28775256
⚠Limited data available — This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ14
Leydig cell hypoplasia, type 1Open Targets
0.33Weak
colorectal cancerOpen Targets
0.02Suggestive
bladder tumorOpen Targets
0.01Suggestive
lung cancerOpen Targets
0.01Suggestive
neoplasmOpen Targets
0.01Suggestive
cervical cancerOpen Targets
0.01Suggestive
cancerOpen Targets
0.00Suggestive
trichomoniasisOpen Targets
0.00Suggestive
cervicitisOpen Targets
0.00Suggestive
Neoplasm of the lungOpen Targets
0.00Suggestive
Pelvic Inflammatory DiseaseOpen Targets
0.00Suggestive
urethritisOpen Targets
0.00Suggestive
urinary bladder carcinomaOpen Targets
0.00Suggestive
vaginitisOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes

No related genes found for this gene.

Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network

No interaction data available for this gene.

PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q3MIM1
View on AlphaFold ↗
RankingsWhere STON1-GTF2A1L stands among ~20K protein-coding genes
  • #16,008of 20,598
    Most Researched14
Genes detectedSTON1-GTF2A1L
Sources retrieved4 papers
Response time—
📄 Sources
4
1
Systems Genetics Reveals the Functional Context of PCOS Loci and Identifies Genetic and Molecular Mechanisms of Disease Heterogeneity.
PMID: 26305227
PLoS Genet · 2015
1.00
2
A genome-wide association study identified a novel genetic loci STON1-GTF2A1L/LHCGR/FSHR for bilaterality of neovascular age-related macular degeneration.
PMID: 28775256
Sci Rep · 2017
0.75
3
Smoking induces differential miRNA expression in human spermatozoa: a potential transgenerational epigenetic concern?
PMID: 22441141
Epigenetics · 2012
0.50
4
Identification of a general transcription factor TFIIAalpha/beta homolog selectively expressed in testis.
PMID: 10364255
J Biol Chem · 1999
0.25