HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
STXBP2
syntaxin binding protein 2
Chromosome 19 Β· 19p13.2
NCBI Gene: 6813Ensembl: ENSG00000076944.18HGNC: HGNC:11445UniProt: Q15833
101PubMed Papers
21Diseases
0Drugs
102Pathogenic Variants
FUNCTIONAL ROLE
Transporter
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingprotein-macromolecule adaptor activityleukocyte mediated cytotoxicitySNARE complex assemblyFamilial hemophagocytic lymphohistiocytosisautoinflammatory syndromehereditary hemophagocytic lymphohistiocytosisgenetic disorder
✦AI Summary

STXBP2 encodes syntaxin binding protein 2, which plays a critical role in intracellular vesicle trafficking and membrane fusion through interactions with SNARE proteins 1. The protein is essential for cytotoxic granule exocytosis in natural killer (NK) cells and CD8+ T cells, regulating immune cell degranulation processes 2. Mutations in STXBP2 cause familial hemophagocytic lymphohistiocytosis type 5 (FHL5), a severe hyperinflammatory syndrome characterized by unremitting fever, cytopenias, hepatosplenomegaly, and multiorgan failure with high mortality 3. STXBP2 defects account for a significant portion of degranulation-related HLH cases, collectively representing >50% of genetic HLH diagnoses 1. The gene is also associated with microvillus inclusion disease, a fatal congenital diarrheal disorder, where STXBP2 functions alongside MYO5B and STX3 in intestinal epithelial cell trafficking 4. Even heterozygous STXBP2 mutations can predispose to secondary HLH during infections like severe COVID-19, causing impaired NK cell cytolysis and degranulation 2. Rare variants in STXBP2 are enriched in systemic juvenile idiopathic arthritis patients, suggesting broader roles in inflammatory diseases 5.

Sources cited
1
STXBP2 mutations account for significant portion of degranulation-related HLH cases and the protein functions through SNARE protein interactions
PMID: 32542393
2
STXBP2 is essential for NK cell cytotoxic granule exocytosis and even heterozygous mutations can cause impaired NK cell function
PMID: 35207437
3
STXBP2 mutations cause familial HLH with characteristic features of hyperinflammation and high mortality
PMID: 32107531
4
STXBP2 mutations are associated with microvillus inclusion disease and function alongside MYO5B and STX3
PMID: 29266534
5
Rare STXBP2 variants are enriched in systemic juvenile idiopathic arthritis patients
PMID: 38937141
Disease Associationsβ“˜21
Familial hemophagocytic lymphohistiocytosisOpen Targets
0.82Strong
autoinflammatory syndromeOpen Targets
0.47Moderate
hereditary hemophagocytic lymphohistiocytosisOpen Targets
0.37Weak
genetic disorderOpen Targets
0.34Weak
ThrombocytopeniaOpen Targets
0.15Weak
Abnormal bleedingOpen Targets
0.15Weak
neuropathic painOpen Targets
0.06Suggestive
Recurrent infection due to specific granule deficiencyOpen Targets
0.04Suggestive
neutrophil immunodeficiency syndromeOpen Targets
0.04Suggestive
immunodeficiency 86Open Targets
0.03Suggestive
SepsisOpen Targets
0.03Suggestive
neoplasmOpen Targets
0.02Suggestive
hemophagocytic syndromeOpen Targets
0.02Suggestive
myocardial infarctionOpen Targets
0.02Suggestive
Epstein-Barr virus infectionOpen Targets
0.01Suggestive
COVID-19Open Targets
0.01Suggestive
inflammatory bowel diseaseOpen Targets
0.01Suggestive
progressive multifocal leukoencephalopathyOpen Targets
0.01Suggestive
Hodgkins lymphomaOpen Targets
0.01Suggestive
hyperinsulinemic hypoglycemia, familial, 4Open Targets
0.01Suggestive
Hemophagocytic lymphohistiocytosis, familial, 5, with or without microvillus inclusion diseaseUniProt
Pathogenic Variants102
NM_006949.4(STXBP2):c.1247-1G>CPathogenic
Familial hemophagocytic lymphohistiocytosis|Familial hemophagocytic lymphohistiocytosis 5|not provided|HEMOPHAGOCYTIC LYMPHOHISTIOCYTOSIS, FAMILIAL, 5, WITHOUT MICROVILLUS INCLUSION DISEASE|Autoinflammatory syndrome|Colon adenocarcinoma|Thyroid cancer, nonmedullary, 1|Malignant tumor of urinary bladder|Lung cancer
β˜…β˜…β˜†β˜†2026
NM_006949.4(STXBP2):c.1621G>A (p.Gly541Ser)Pathogenic
Familial hemophagocytic lymphohistiocytosis 5|not provided|Autoinflammatory syndrome|Familial hemophagocytic lymphohistiocytosis|STXBP2-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 541
NM_006949.4(STXBP2):c.1611T>G (p.Tyr537Ter)Pathogenic
Familial hemophagocytic lymphohistiocytosis 5
β˜…β˜…β˜†β˜†2025β†’ Residue 537
NM_006949.4(STXBP2):c.1107+2T>GLikely pathogenic
Familial hemophagocytic lymphohistiocytosis 5
β˜…β˜…β˜†β˜†2025
NM_006949.4(STXBP2):c.1430C>T (p.Pro477Leu)Pathogenic
Familial hemophagocytic lymphohistiocytosis 5|STXBP2-related disorder|Familial hemophagocytic lymphohistiocytosis
β˜…β˜…β˜†β˜†2025β†’ Residue 477
NM_006949.4(STXBP2):c.560C>T (p.Pro187Leu)Pathogenic
Familial hemophagocytic lymphohistiocytosis 5|Familial hemophagocytic lymphohistiocytosis|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 187
NM_006949.4(STXBP2):c.80del (p.Glu27fs)Pathogenic
Familial hemophagocytic lymphohistiocytosis 5
β˜…β˜…β˜†β˜†2025β†’ Residue 27
NM_006949.4(STXBP2):c.1213C>T (p.Arg405Trp)Pathogenic
Familial hemophagocytic lymphohistiocytosis 5|Familial hemophagocytic lymphohistiocytosis
β˜…β˜…β˜†β˜†2025β†’ Residue 405
NM_006949.4(STXBP2):c.703C>G (p.Arg235Gly)Likely pathogenic
Familial hemophagocytic lymphohistiocytosis 5|Familial hemophagocytic lymphohistiocytosis
β˜…β˜…β˜†β˜†2025β†’ Residue 235
NM_006949.4(STXBP2):c.1214G>A (p.Arg405Gln)Pathogenic
Familial hemophagocytic lymphohistiocytosis 5|Familial hemophagocytic lymphohistiocytosis
β˜…β˜…β˜†β˜†2025β†’ Residue 405
NM_006949.4(STXBP2):c.902+5G>APathogenic
Familial hemophagocytic lymphohistiocytosis 5|Familial hemophagocytic lymphohistiocytosis|not provided
β˜…β˜…β˜†β˜†2025
NM_006949.4(STXBP2):c.247-2A>CLikely pathogenic
Familial hemophagocytic lymphohistiocytosis 5|Familial hemophagocytic lymphohistiocytosis
β˜…β˜…β˜†β˜†2025
NM_006949.4(STXBP2):c.247-2A>GLikely pathogenic
Familial hemophagocytic lymphohistiocytosis 5|not provided
β˜…β˜…β˜†β˜†2024
NM_006949.4(STXBP2):c.1697G>A (p.Gly566Asp)Pathogenic
not provided|Familial hemophagocytic lymphohistiocytosis 5|Familial hemophagocytic lymphohistiocytosis
β˜…β˜…β˜†β˜†2024β†’ Residue 566
NM_006949.4(STXBP2):c.87+2T>CPathogenic
Familial hemophagocytic lymphohistiocytosis 5
β˜…β˜…β˜†β˜†2024
NM_006949.4(STXBP2):c.194G>A (p.Arg65Gln)Pathogenic
Familial hemophagocytic lymphohistiocytosis 5|Familial hemophagocytic lymphohistiocytosis|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 65
NM_006949.4(STXBP2):c.37+5G>ALikely pathogenic
Familial hemophagocytic lymphohistiocytosis 5
β˜…β˜…β˜†β˜†2024
NM_006949.4(STXBP2):c.169+2T>GPathogenic
not provided|Familial hemophagocytic lymphohistiocytosis 5
β˜…β˜…β˜†β˜†2024
NM_006949.4(STXBP2):c.1107+1G>CLikely pathogenic
Familial hemophagocytic lymphohistiocytosis 5
β˜…β˜…β˜†β˜†2024
NM_006949.4(STXBP2):c.1356+1G>TLikely pathogenic
Familial hemophagocytic lymphohistiocytosis 5
β˜…β˜…β˜†β˜†2024
View on ClinVar β†—
Related Genes
VAMP2Protein interaction100%SNAP23Protein interaction100%VAMP8Protein interaction99%FHL2Protein interaction97%RAB27AProtein interaction97%STX19Protein interaction87%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
63%
Liver
34%
Brain
7%
Ovary
3%
Heart
2%
Gene Interaction Network
Click a node to explore
STXBP2VAMP2SNAP23VAMP8FHL2RAB27ASTX19
PROTEIN STRUCTURE
Preparing viewer…
PDB4CCA Β· 2.60 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.87LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.69 [0.54–0.87]
RankingsWhere STXBP2 stands among ~20K protein-coding genes
  • #4,752of 20,598
    Most Researched101 Β· top quartile
  • #756of 5,498
    Most Pathogenic Variants102 Β· top quartile
  • #7,726of 17,882
    Most Constrained (LOEUF)0.87
Genes detectedSTXBP2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Pediatric hemophagocytic lymphohistiocytosis.
PMID: 32107531
Blood Β· 2020
1.00
2
Prognostic analysis and validation of diagnostic marker genes in patients with osteoporosis.
PMID: 36311708
Front Immunol Β· 2022
0.90
3
Frequency and spectrum of disease-causing variants in 1892 patients with suspected genetic HLH disorders.
PMID: 32542393
Blood Adv Β· 2020
0.80
4
Neuroinflammatory Disease as an Isolated Manifestation of Hemophagocytic Lymphohistiocytosis.
PMID: 32638196
J Clin Immunol Β· 2020
0.70
5
MYO5B, STX3, and STXBP2 mutations reveal a common disease mechanism that unifies a subset of congenital diarrheal disorders: A mutation update.
PMID: 29266534
Hum Mutat Β· 2018
0.60