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25 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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SUV39H1
SUV39H1 histone lysine methyltransferase
Chromosome X · Xp11.23
NCBI Gene: 6839Ensembl: ENSG00000101945.18HGNC: HGNC:11479UniProt: O43463
183PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneTranscription Factor
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
negative regulation of transcription by RNA polymerase IIDNA damage responsecellular response to hypoxiahistone H3K9 trimethyltransferase activityependymomaneoplasmacute myeloid leukemiabreast cancer
✦AI Summary

SUV39H1 is a histone lysine methyltransferase that catalyzes H3K9 trimethylation, establishing and maintaining constitutive heterochromatin through a positive feedback mechanism. HP1 proteins recognize pre-existing H3K9me3 marks and recruit SUV39H1 to methylate newly incorporated histones 1. This process is dynamically regulated: ASB7 ubiquitin ligase promotes SUV39H1 degradation to prevent excessive heterochromatin, while CDK1 phosphorylation of ASB7 during mitosis stabilizes SUV39H1 for epigenetic inheritance 1. ZNF512 and ZNF512B zinc-finger proteins specifically recruit SUV39H1 to pericentric regions to initiate de novo heterochromatin formation 2. Beyond chrX silencing, SUV39H1 methylates non-histone substrates with disease-relevant consequences. It methylates cGAS to enhance chrX sequestration and suppress antitumor immunity; methionine restriction blocks this methylation, activating cGAS-mediated antiviral responses 3. SUV39H1 represses heme oxygenase 1 (HMOX1) transcription, promoting hepatic stellate cell activation and liver fibrosis; pharmacological inhibition by chaetocin ameliorates fibrosis in mice 4. SUV39H1 function is therapeutically targetable: FBXO44/SUV39H1 inhibition reactivates repetitive elements in cancer cells, triggering DNA replication stress and viral mimicry to enhance immunotherapy response 5. SUV39H1 disruption enhances CAR T-cell persistence and antitumor efficacy by improving memory transcription factor expression while limiting exhaustion 6.

Sources cited
1
HP1 proteins recognize pre-existing H3K9me3 marks and recruit SUV39H1 to methylate newly incorporated histones .
PMID: 40440427
2
ZNF512 and ZNF512B zinc-finger proteins specifically recruit SUV39H1 to pericentric regions to initiate de novo heterochromatin formation .
PMID: 38961301
3
It methylates cGAS to enhance chrX sequestration and suppress antitumor immunity; methionine restriction blocks this methylation, activating cGAS-mediated antiviral responses .
PMID: 37267951
4
SUV39H1 represses heme oxygenase 1 (HMOX1) transcription, promoting hepatic stellate cell activation and liver fibrosis; pharmacological inhibition by chaetocin ameliorates fibrosis in mice .
PMID: 38176898
5
SUV39H1 function is therapeutically targetable: FBXO44/SUV39H1 inhibition reactivates repetitive elements in cancer cells, triggering DNA replication stress and viral mimicry to enhance immunotherapy response .
PMID: 33357448
6
SUV39H1 disruption enhances CAR T-cell persistence and antitumor efficacy by improving memory transcription factor expression while limiting exhaustion .
PMID: 37934007
Disease Associationsⓘ20
ependymomaOpen Targets
0.11Weak
neoplasmOpen Targets
0.11Weak
acute myeloid leukemiaOpen Targets
0.10Weak
breast cancerOpen Targets
0.09Suggestive
glioblastoma multiformeOpen Targets
0.09Suggestive
hepatocellular carcinomaOpen Targets
0.09Suggestive
chronic obstructive pulmonary diseaseOpen Targets
0.08Suggestive
non-small cell lung carcinomaOpen Targets
0.08Suggestive
posterior cortical atrophyOpen Targets
0.08Suggestive
systemic lupus erythematosusOpen Targets
0.08Suggestive
Nijmegen breakage syndromeOpen Targets
0.08Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.08Suggestive
oral squamous cell carcinomaOpen Targets
0.07Suggestive
leukemiaOpen Targets
0.07Suggestive
acute lymphoblastic leukemiaOpen Targets
0.07Suggestive
Chronic mucocutaneous candidosisOpen Targets
0.07Suggestive
Ewing sarcomaOpen Targets
0.06Suggestive
reticulum cell sarcomaOpen Targets
0.06Suggestive
Juvenile Myelomonocytic LeukemiaOpen Targets
0.06Suggestive
synovial sarcomaOpen Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
DNMT1Protein interaction100%DNMT3BProtein interaction100%HDAC1Protein interaction100%MBD1Protein interaction100%MECP2Protein interaction100%MYOD1Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Liver
53%
Brain
47%
Heart
31%
Ovary
30%
Lung
26%
Gene Interaction Network
Click a node to explore
SUV39H1DNMT1DNMT3BHDAC1MBD1MECP2MYOD1
PROTEIN STRUCTURE
Preparing viewer…
PDB3MTS · 2.20 Å · X-ray
View on RCSB ↗
RankingsWhere SUV39H1 stands among ~20K protein-coding genes
  • #2,371of 20,598
    Most Researched183 · top quartile
Genes detectedSUV39H1
Sources retrieved25 papers
Response time—
📄 Sources
25▼
1
ASB7 is a negative regulator of H3K9me3 homeostasis.
PMID: 40440427
Science · 2025
1.00
2
FBXO44 promotes DNA replication-coupled repetitive element silencing in cancer cells.
PMID: 33357448
Cell · 2021
0.90
3
Methionine restriction promotes cGAS activation and chromatin untethering through demethylation to enhance antitumor immunity.
PMID: 37267951
Cancer Cell · 2023
0.80
4
Histone methyltransferase Suv39h1 regulates hepatic stellate cell activation and is targetable in liver fibrosis.
PMID: 38176898
Gut · 2024
0.70
5
SUV39H1 maintains cancer stem cell chromatin state and properties in glioblastoma.
PMID: 40059829
JCI Insight · 2025
0.68