HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
25 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
SYNCRIP
synaptotagmin binding cytoplasmic RNA interacting protein
Chromosome 6 Β· 6q14.3
NCBI Gene: 10492Ensembl: ENSG00000135316.20HGNC: HGNC:16918UniProt: A0A7I2V309
349PubMed Papers
20Diseases
0Drugs
5Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedHub Gene
RESEARCH IMPACT
Highly StudiedTrending
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
membranecatalytic step 2 spliceosomenegative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decaypositive regulation of cytoplasmic translationSYNCRIP-related neurodevelopmental disorderGlobal developmental delayautism spectrum disorderIntellectual disability
✦AI Summary

SYNCRIP (hnRNP Q) is a heterogeneous nuclear ribonucleoprotein that functions as a multifaceted post-transcriptional regulator. Primary functions include mRNA processing and stability control; it associates with pre-mRNA and mature mRNA complexes 1 and is a component of the CRD-mediated mRNA stability complex that promotes MYC mRNA stability. SYNCRIP modulates APOB mRNA C-to-U RNA editing and participates in the GAIT complex, which selectively suppresses translation of inflammatory mRNAs upon interferon-gamma activation 2. Mechanistically, SYNCRIP regulates cortical neurogenesis by maintaining transcription factor expression through phase-separation-dependent complex formation, crucially controlling the Notch signaling pathway that determines radial glial cell fate 3. It also interacts with LIN28B to modulate the LIN28B/let-7 tumor-suppressive axis in hepatocellular carcinoma 2. Disease relevance spans neurodevelopmental and cancer contexts. Rare deleterious SYNCRIP mutations contribute to neurodevelopmental disorders with enriched de novo variants 1, and SYNCRIP knockout disrupts cortical layer development and causes learning impairments in mice 3. In cancer, SYNCRIP loss unleashes APOBEC3B-driven mutagenesis and therapy resistance in prostate cancer 4, while elevated SYNCRIP promotes colorectal cancer proliferation via DNMT3A/p16 dysregulation 5. High SYNCRIP expression predicts poor outcomes in hepatocellular carcinoma and ovarian cancer 26, and its secretion from treated ovarian cancer cells enhances therapy resistance 7.

Sources cited
1
SYNCRIP carries rare deleterious variants enriched in neurodevelopmental disorders with shared clinical presentations across hnRNP gene family members
PMID: 33874999
2
SYNCRIP loss suppresses APOBEC-driven mutagenesis and unleashes APOBEC3B activity driving therapy resistance in prostate cancer
PMID: 37478850
3
SYNCRIP interacts with LIN28B in an RNA-dependent manner to modulate the LIN28B/let-7 axis; high SYNCRIP expression is a poor prognostic marker in hepatocellular carcinoma
PMID: 38976670
4
SYNCRIP maintains temporal transcription factors through phase-separation-dependent complexes, regulating Notch signaling and radial glial fate; its knockout disrupts cortical layer development and learning
PMID: 39776340
5
SYNCRIP overexpression promotes colorectal cancer proliferation via DNMT3A-mediated p16 suppression; SYNCRIP depletion inhibits tumor growth
PMID: 39284825
6
SYNCRIP is identified as a stress granule-related gene with prognostic value for ovarian cancer survival
PMID: 39809219
7
Therapy-induced secreted SYNCRIP promotes cisplatin resistance and DNA damage repair in ovarian cancer cells
PMID: 38898005
8
SYNCRIP interacts with full-length SMN and regulates motor neuron transcripts containing motif 7; SYNCRIP overexpression rescues spinal muscular atrophy phenotypes in cellular and animal models
PMID: 30649277
Disease Associationsβ“˜20
SYNCRIP-related neurodevelopmental disorderOpen Targets
0.48Moderate
Global developmental delayOpen Targets
0.42Moderate
autism spectrum disorderOpen Targets
0.42Moderate
Intellectual disabilityOpen Targets
0.42Moderate
autismOpen Targets
0.42Moderate
Generalized myoclonic-atonic seizureOpen Targets
0.42Moderate
complex neurodevelopmental disorderOpen Targets
0.37Weak
genetic disorderOpen Targets
0.19Weak
ovarian dysfunctionOpen Targets
0.17Weak
colorectal carcinomaOpen Targets
0.09Suggestive
neoplasmOpen Targets
0.08Suggestive
leukemiaOpen Targets
0.08Suggestive
posterior cortical atrophyOpen Targets
0.07Suggestive
colorectal cancerOpen Targets
0.05Suggestive
Neurodevelopmental delayOpen Targets
0.05Suggestive
hepatocellular carcinomaOpen Targets
0.05Suggestive
myeloid leukemiaOpen Targets
0.04Suggestive
Pick diseaseOpen Targets
0.04Suggestive
amyotrophic lateral sclerosisOpen Targets
0.04Suggestive
acute myeloid leukemiaOpen Targets
0.03Suggestive
Pathogenic Variants5
NM_006372.5(SYNCRIP):c.1473dup (p.Gln492fs)Pathogenic
SYNCRIP-related neurodevelopmental disorder
β˜…β˜†β˜†β˜†2025β†’ Residue 492
NM_006372.5(SYNCRIP):c.700_701del (p.Ile234fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 234
NM_006372.5(SYNCRIP):c.1336C>T (p.Arg446Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 446
NM_006372.5(SYNCRIP):c.438dup (p.Pro147fs)Likely pathogenic
SYNCRIP-associated neurodevelopmental disorder
β˜…β˜†β˜†β˜†2023β†’ Residue 147
NM_006372.5(SYNCRIP):c.858_859del (p.Gly287fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2020β†’ Residue 287
View on ClinVar β†—
Related Genes
A1CFProtein interaction100%RPS26Protein interaction100%RPS20Protein interaction100%RPSAProtein interaction99%GAPDHProtein interaction97%PARS2Protein interaction97%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
86%
Heart
51%
Ovary
46%
Lung
45%
Liver
42%
Gene Interaction Network
Click a node to explore
SYNCRIPA1CFRPS26RPS20RPSAGAPDHPARS2
PROTEIN STRUCTURE
Preparing viewer…
PDB6KOR Β· 2.60 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.25Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.14 [0.09–0.25]
RankingsWhere SYNCRIP stands among ~20K protein-coding genes
  • #910of 20,598
    Most Researched349 Β· top 5%
  • #3,471of 5,498
    Most Pathogenic Variants5
  • #757of 17,882
    Most Constrained (LOEUF)0.25 Β· top 5%
Genes detectedSYNCRIP
Sources retrieved25 papers
Response timeβ€”
πŸ“„ Sources
25β–Ό
1
Rare deleterious mutations of HNRNP genes result in shared neurodevelopmental disorders.
PMID: 33874999
Genome Med Β· 2021
1.00
2
Loss of SYNCRIP unleashes APOBEC-driven mutagenesis, tumor heterogeneity, and AR-targeted therapy resistance in prostate cancer.
PMID: 37478850
Cancer Cell Β· 2023
0.90
3
hnRNP Q/SYNCRIP interacts with LIN28B and modulates the LIN28B/let-7 axis in human hepatoma cells.
PMID: 38976670
PLoS One Β· 2024
0.80
4
RNA-binding protein syncrip regulates starvation-induced hyperactivity in adult Drosophila.
PMID: 33617535
PLoS Genet Β· 2021
0.80
5
Posttranscriptional Control of Neural Progenitors Temporal Dynamics During Neocortical Development by Syncrip.
PMID: 39776340
Adv Sci (Weinh) Β· 2025
0.70